- Transcript BART1_0-u25331.009
- Transcript IDBART1_0-u25331.009
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779769 | + |
| chr3H | 2 | 679780077 | 679780006 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679782577 | 679782473 | + |
| chr3H | 8 | 679783932 | 679783777 | + |
| chr3H | 9 | 679784080 | 679784000 | + |
| chr3H | 10 | 679784262 | 679784187 | + |
| chr3H | 11 | 679784610 | 679784345 | + |
| chr3H | 12 | 679785333 | 679785100 | + |
| chr3H | 13 | 679786251 | 679785445 | + |
| chr3H | 14 | 679786764 | 679786475 | + |
| chr3H | 15 | 679788633 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.1316 | 1.04061 | 1.28821 |
| morex | ETI | 0 | 0.357741 | 0 |
| morex | LEA | 0.00152882 | 0 | 0.385187 |
| morex | EPI | 1.76499 | 2.13325 | 0.237822 |
| morex | ROO | 0 | 0.00000000150256 | 0 |
| morex | ROO2 | 0 | 0.000000440001 | 0.000167023 |
| morex | NOD | 0.000287107 | 0.000000000706302 | 0.00000000684164 |
| morex | RAC | 0 | 0 | 0.0000048075 |
| morex | INF1 | 0.00169661 | 3.93294 | 0.00670344 |
| morex | INF2 | 2.8258 | 0.0000239161 | 2.39727 |
| morex | CAR5 | 0.0052354 | 2.59441 | 7.88429 |
| morex | CAR15 | 0.00000000290373 | 1.8636 | 0 |
| morex | LEM | 0 | 0 | 0.00361923 |
| morex | LOD | 0.117298 | 0.0266693 | 0.0000845088 |
| morex | PAL | 0.000114854 | 0.000000000154923 | 0 |
| morex | SEN | 0 | 1.37653 | 0.674475 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 1602 | 880/1147 (77%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g58697.3.p | +1 | 0.0 | 1818 | 960/1121 (86%) | pacid=32780757 transcript=Bradi2g58697.3 locus=Bradi2g58697 ID=Bradi2g58697.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3872 bp)
>BART1_0-u25331.009 3872 150831_barley_pseudomolecules AACAGCTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTAAT CAACTGAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGGTTGATGCTATGGCAGGA AGTGAAACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTG AATAAGTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCA ATTCCTCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCC ACATATATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTAT GCCGAGTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTG GAAGATCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCT GTAATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAAT GAAGAAGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAG TTAATCATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGG AACGGCCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCAT TTTCCAAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTT GAAGATAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGA ATCCAAGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTA TCAGTGCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCA CTGAAGATCAACATGGAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATG CAGGATGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTT TTCAACACGGTGAATCATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGT TGTTGTACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATG GCCTACCATTGGAAGAGTGACGAATCAATATATGAGCGTGAATGTGGAAATAAGCCGGGA TTCGCTGTATACTTCAGATTTCCAAATAGTCAACGCGTATCTTATCCTCAGTTTGTTAAA GTTCATTGGAAATGGAGTGGAAGAATTACCAAGGTGCTTAATCAATGTATGGAGTCAAAG GAATACATGGAAATCAGAAACGCCCTTATTGTGCTCACAAAGATAACTAGTATTTTTCCT GTGATGCGAAAAAGCGGTATCAACATCGAGAAAAGGGTTGCGAAGCTAAAGGGGGATGAG AGGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGGCCGCTCGCAAGAGT TCATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCACCTTGATCTGAAGCCAGTGCTTGCA AAACCTATTGCTGGAAATCAGTATGCAGATCCCTCGACAGCAAAAGATCATAGCGTTCGT GCAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAAAATGCAATGAAGCCTGATGCTCAA CATAAGAAGAATGCCTCAACTACAAACGGGTCTGATAGTCAAATACCATCTTCCTCTGCA CAAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGATGAACCTCCAAAACTTTTGTCCGAT GATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCCGAGACAAGAGCGTCACAAAAGCGT GCTGTACACAATGCTGCAAAGGTATCTAAGCATGATGTGGTGAAGGAAGATGCAAAACCT GGGAGATCTACTAGCAGGGGTCTTAATCAACAAGCCTCTGCTATTCCTGTTGACAAAGAA GTATTGTCTCAGGCAGCTGATGGTGTGCTGGATACTAATCCCACTAGTCCGTTGGTTGGC ACAAATGGTAATGTACATCCGGCACCACGAAAGCAAAAAAGATCTGTCGCCGTTGAAGAA CAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCGGGATGGTGACTTGGCA GAACACCATACGGACAAAGAAAAAAAATTGGACCCGCGATCAGTAGATAAATTTCGTTCT GTGGATCATGAGAGAGGTGCTAGTGAGGAACAAAACCTAATTCGGACAGAGAAATTAAAA GAAAAGTTCGATGAGAAATATGAAAGAGATCATAGAGAAAAAGCAGATCGGTCTGAGAGG CGCCGTGGAGAAGACGTGGTTGAGAGACCAACAGACAGATCATTGGAAAGGAGAGAGCGT TCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAAGACAGGAATAAGGAG GAGAGGAACAAAATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGAATGAACCC ATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGCAT GAACCCATAGACCGAGCACATACTTCTGACGAACGCTTCCGAGGGCAAAGCTTGCCACCA CCTCCACCTCTTCCAACTAGTTTTGTACCCCAATCAGTCGCTGCTAACCGAAGAGATGAA GACATTGACCGAAGGGGGAGCAGCACCAGGCATACACAGCGGTTGTCTCCCAGGCGTGAT GAGAAAGAAAGGTGGCACTTGGAGGAGAATGCTCCGCTGTTGCAGGATGATGGGAAGCAC AGGAGAGAGGAAGATCTCCGGGATAGAAAGCGTGAAGATAGGGATGTTTCATCAAGCAAG GTAGACGACAGGGATAGGGACAAAGGTAATACTGTGAAGGAAGATAGTGATCCTAATAGT GCATCCAAACGTCGAAAGATTAAAAGAGAACAGTCTGCTTTGGAGGCTGGGGAATACGCG CCTTCTGCTCCACAGCCTCCGAGCGTTGGACCTGGTAACTCACAGTATGAAATACGAGAG AGAGAAAGAAAGGGTGCTATTTCACAGCATCGTCCATCACATGCTGATGACCTTCCTAGG ATGCATGCCAAGGATTCAACAAGCAAGACAAGTCGTAGAGAGGCTGACCAAACGCATGAT AGAGAATGGGAAGAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGGAAGCATCGGAAGTAG GTTCATGCGGGTGTCTTGATCATTCTCACATATCAAGGTGTTTCACTTGGCGATGTGCAC CTGCGAACAAGTCGCTTTCTTGTAGGAGGAAAATGTATCTGGCATATTTGAACCATTCAG TGTGTATGCCTCACTCCATGGTTTTAGAAAGGTTTGCTGGGGCTGAAGAGGATCCACATG ATCAATCCTTCAGCAGTACTCCGTCAATGCTATCCAGATGCAAATTATTGCAAACATTGT TGATTGCAAGGAACATATGGCCTGTTATACAGGTCGTTATAAACATTTTAGCAATGTGGA ATGTAAGGAAGAGTACATGGGCCATACCATTAACTTAGACGGATTTGCTGTAAACAAGGA TGAGCAGTTTTTCGCCCAGCTATTTTTTGTATTTTATTTTGTACTAAATGCAGACAGTTT TGTTGTGGGAGGCATTTGTGCTTCCTTTTTCTGCACCGTCTAGGAGGAATAGCAGGGTGG CGGGTTGTGAGTAGGTTGTACATGTACAGTTACAATGGTCGCATGAACCATCGTGTTCTA GATGTTAAACTGAGATGGTTGCATAAACCGTC
Protein Sequence (1099 aa)
>BART1_0-u25331.009 1099 150831_barley_pseudomolecules NSCKKHLSMELKCLFQYIVNQLKKGLGTELVVLEVDAMAGSETLRLQSSLFGSTRNYKVL NKSTNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKMVSEQFDRCHGILLQY AEFLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLFKSANGGEACWPLDDN EEGESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSPELYATFWGLTLYDLH FPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDKLNNESDKHQHHVL SVLQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVYCATFVQMMHSLGTPF FNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKSDESIYERECGNKPG FAVYFRFPNSQRVSYPQFVKVHWKWSGRITKVLNQCMESKEYMEIRNALIVLTKITSIFP VMRKSGINIEKRVAKLKGDEREDLKVLATGVAAALAARKSSWVSEEEFGMGHLDLKPVLA KPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNASTTNGSDSQIPSSSA QGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNAAKVSKHDVVKEDAKP GRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNVHPAPRKQKRSVAVEE QERTGKRRKGEIEGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASEEQNLIRTEKLK EKFDEKYERDHREKADRSERRRGEDVVERPTDRSLERRERSIEKMQERVPEKGREDRNKE ERNKIKHEPIDRAHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTSDERFRGQSLPP PPPLPTSFVPQSVAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEENAPLLQDDGKH RREEDLRDRKREDRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKREQSALEAGEYA PSAPQPPSVGPGNSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSKTSRREADQTHD REWEEEKRPRTEAKRKHRK