- Transcript BART1_0-u25331.008
- Transcript IDBART1_0-u25331.008
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779769 | + |
| chr3H | 2 | 679780077 | 679779961 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679782577 | 679782473 | + |
| chr3H | 8 | 679783932 | 679783777 | + |
| chr3H | 9 | 679784080 | 679784000 | + |
| chr3H | 10 | 679784262 | 679784187 | + |
| chr3H | 11 | 679784610 | 679784345 | + |
| chr3H | 12 | 679786251 | 679785100 | + |
| chr3H | 13 | 679786764 | 679786475 | + |
| chr3H | 14 | 679788643 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 9.4953 | 18.2769 | 13.7718 |
| morex | ETI | 16.275 | 15.0775 | 15.0374 |
| morex | LEA | 13.0637 | 14.3317 | 10.3795 |
| morex | EPI | 8.50644 | 9.81855 | 8.20315 |
| morex | ROO | 3.12221 | 9.26162 | 2.77433 |
| morex | ROO2 | 12.1408 | 11.9845 | 13.6635 |
| morex | NOD | 10.0696 | 13.2084 | 14.7163 |
| morex | RAC | 21.3437 | 22.96 | 20.0508 |
| morex | INF1 | 47.8914 | 43.9941 | 43.7957 |
| morex | INF2 | 53.6497 | 67.8891 | 52.8494 |
| morex | CAR5 | 36.8789 | 36.6644 | 34.176 |
| morex | CAR15 | 25.9854 | 26.23 | 25.3082 |
| morex | LEM | 21.3848 | 19.3556 | 19.4986 |
| morex | LOD | 26.3424 | 28.8016 | 22.8254 |
| morex | PAL | 15.9226 | 18.8277 | 17.3304 |
| morex | SEN | 12.3523 | 14.62 | 8.80556 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 1621 | 894/1184 (76%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g58697.1.p | +1 | 0.0 | 1927 | 1010/1158 (87%) | pacid=32780755 transcript=Bradi2g58697.1 locus=Bradi2g58697 ID=Bradi2g58697.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4038 bp)
>BART1_0-u25331.008 4038 150831_barley_pseudomolecules AACAGCTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTAAT CAACTGAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGCAAATGGCAAATGTACAG TACACTGAGAACATGACTGATGAACAGGTTGATGCTATGGCAGGAAGTGAAACATTGCGG CTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTGAATAAGTCTACTAAC AAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCAATTCCTCTACTACTG CTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCCACATATATCAAAATG GTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTATGCCGAGTTTCTTTCA AGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTGGAAGATCTCGTTTAT AAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCTGTAATGAGGCTTTTC AAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAATGAAGAAGGGGAGTCT GTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAGTTAATCATGTGGTCA GATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGGAACGGCCTTTCACCC GAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCATTTTCCAAAAGATCGT TATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTTGAAGATAACTCAGAT AACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGAATCCAAGATTTGCTG GACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTATCAGTGCTCCAAAGG CTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCACTGAAGATCAACATG GAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATGCAGGATGCTGTATAT TGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTTTTCAACACGGTGAAT CATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGTTGTTGTACAGAATAT GAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATGGCCTACCATTGGAAG AGTGACGAATCAATATATGAGCGTGAATGTGGAAATAAGCCGGGATTCGCTGTATACTTC AGATTTCCAAATAGTCAACGCGTATCTTATCCTCAGTTTGTTAAAGTTCATTGGAAATGG AGTGGAAGAATTACCAAGGTGCTTAATCAATGTATGGAGTCAAAGGAATACATGGAAATC AGAAACGCCCTTATTGTGCTCACAAAGATAACTAGTATTTTTCCTGTGATGCGAAAAAGC GGTATCAACATCGAGAAAAGGGTTGCGAAGCTAAAGGGGGATGAGAGGGAAGATCTGAAA GTACTGGCCACTGGTGTAGCTGCTGCTCTGGCCGCTCGCAAGAGTTCATGGGTGTCTGAA GAAGAGTTTGGCATGGGTCACCTTGATCTGAAGCCAGTGCTTGCAAAACCTATTGCTGGA AATCAGTATGCAGATCCCTCGACAGCAAAAGATCATAGCGTTCGTGCAAAATCTGTAGAG GGTAGGCATGAAAGGTCAGAAAATGCAATGAAGCCTGATGCTCAACATAAGAAGAATGCC TCAACTACAAACGGGTCTGATAGTCAAATACCATCTTCCTCTGCACAAGGAAAAGGTTCA GGGATTGCACGCGGTGCAGATGAACCTCCAAAACTTTTGTCCGATGATGGAGTTAAAGTC TTGAAGCCTACTGCAGAACCCGAGACAAGAGCGTCACAAAAGCGTGCTGTACACAATGCT GCAAAGGTATCTAAGCATGATGTGGTGAAGGAAGATGCAAAACCTGGGAGATCTACTAGC AGGGGTCTTAATCAACAAGCCTCTGCTATTCCTGTTGACAAAGAAGTATTGTCTCAGGCA GCTGATGGTGTGCTGGATACTAATCCCACTAGTCCGTTGGTTGGCACAAATGGTAATGTA CATCCGGCACCACGAAAGGTATCAGCATCCTCCCAAAGATCAACAGTATTGGCTGCACAT AGCGGTGGAACAGCTAATCCCACCGGTGAAGGTGAATCTGCTGACTTGATTGATTCTACC GTGAAACAGCAAAAAAGATCTGTCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGG AAAGGAGAGATTGAAGGCCGGGATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAA AAATTGGACCCGCGATCAGTAGATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGT GAGGAACAAAACCTAATTCGGACAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAA AGAGATCATAGAGAAAAAGCAGATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAG AGACCAACAGACAGATCATTGGAAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGA GTTCCTGAAAAAGGAAGAGAAGACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAA CCCATAGACCGAGCACATACTATTAAGAATGAACCCATAGACCGAGCACATACTATTAAG CATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCACATACT TCTGACGAACGCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTCTTCCAACTAGTTTT GTACCCCAATCAGTCGCTGCTAACCGAAGAGATGAAGACATTGACCGAAGGGGGAGCAGC ACCAGGCATACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAG GAGAATGCTCCGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGGAAGATCTCCGGGAT AGAAAGCGTGAAGATAGGGATGTTTCATCAAGCAAGGTAGACGACAGGGATAGGGACAAA GGTAATACTGTGAAGGAAGATAGTGATCCTAATAGTGCATCCAAACGTCGAAAGATTAAA AGAGAACAGTCTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTCCACAGCCTCCGAGC GTTGGACCTGGTAACTCACAGTATGAAATACGAGAGAGAGAAAGAAAGGGTGCTATTTCA CAGCATCGTCCATCACATGCTGATGACCTTCCTAGGATGCATGCCAAGGATTCAACAAGC AAGACAAGTCGTAGAGAGGCTGACCAAACGCATGATAGAGAATGGGAAGAGGAGAAGAGG CCAAGAACTGAAGCAAAGAGGAAGCATCGGAAGTAGGTTCATGCGGGTGTCTTGATCATT CTCACATATCAAGGTGTTTCACTTGGCGATGTGCACCTGCGAACAAGTCGCTTTCTTGTA GGAGGAAAATGTATCTGGCATATTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTT TAGAAAGGTTTGCTGGGGCTGAAGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGT CAATGCTATCCAGATGCAAATTATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTG TTATACAGGTCGTTATAAACATTTTAGCAATGTGGAATGTAAGGAAGAGTACATGGGCCA TACCATTAACTTAGACGGATTTGCTGTAAACAAGGATGAGCAGTTTTTCGCCCAGCTATT TTTTGTATTTTATTTTGTACTAAATGCAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTC CTTTTTCTGCACCGTCTAGGAGGAATAGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATG TACAGTTACAATGGTCGCATGAACCATCGTGTTCTAGATGTTAAACTGAGATGGTTGCAT AAACCGTCGTGTTCTAAA
Protein Sequence (1151 aa)
>BART1_0-u25331.008 1151 150831_barley_pseudomolecules NSCKKHLSMELKCLFQYIVNQLKKGLGTELVVLEQMANVQYTENMTDEQVDAMAGSETLR LQSSLFGSTRNYKVLNKSTNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKM VSEQFDRCHGILLQYAEFLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLF KSANGGEACWPLDDNEEGESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSP ELYATFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLL DKLNNESDKHQHHVLSVLQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVY CATFVQMMHSLGTPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWK SDESIYERECGNKPGFAVYFRFPNSQRVSYPQFVKVHWKWSGRITKVLNQCMESKEYMEI RNALIVLTKITSIFPVMRKSGINIEKRVAKLKGDEREDLKVLATGVAAALAARKSSWVSE EEFGMGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNA STTNGSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNA AKVSKHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNV HPAPRKVSASSQRSTVLAAHSGGTANPTGEGESADLIDSTVKQQKRSVAVEEQERTGKRR KGEIEGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASEEQNLIRTEKLKEKFDEKYE RDHREKADRSERRRGEDVVERPTDRSLERRERSIEKMQERVPEKGREDRNKEERNKIKHE PIDRAHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTSDERFRGQSLPPPPPLPTSF VPQSVAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEENAPLLQDDGKHRREEDLRD RKREDRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKREQSALEAGEYAPSAPQPPS VGPGNSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSKTSRREADQTHDREWEEEKR PRTEAKRKHRK