- Transcript BART1_0-u25331.007
- Transcript IDBART1_0-u25331.007
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779769 | + |
| chr3H | 2 | 679780077 | 679779949 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679783932 | 679783777 | + |
| chr3H | 8 | 679784084 | 679784000 | + |
| chr3H | 9 | 679784262 | 679784187 | + |
| chr3H | 10 | 679784610 | 679784345 | + |
| chr3H | 11 | 679785333 | 679785100 | + |
| chr3H | 12 | 679786251 | 679785445 | + |
| chr3H | 13 | 679786823 | 679786475 | + |
| chr3H | 14 | 679788725 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.00000156521 |
| morex | ETI | 0.238035 | 0.654501 | 0 |
| morex | LEA | 0.000482908 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.265383 | 0.440676 |
| morex | NOD | 0 | 0.000000459567 | 0 |
| morex | RAC | 0 | 0.431032 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.365818 | 0 | 0.311785 |
| morex | CAR5 | 0.14516 | 0.389539 | 0 |
| morex | CAR15 | 0.00000000863035 | 0 | 0 |
| morex | LEM | 0 | 2.10796 | 0 |
| morex | LOD | 0.648942 | 0 | 0.985032 |
| morex | PAL | 0.0000811445 | 0.000000958182 | 0 |
| morex | SEN | 0 | 0.472937 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 832 | 427/545 (78%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+1 | 0.0 | 680 | 341/529 (64%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.2.p | +1 | 0.0 | 949 | 466/485 (96%) | pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3979 bp)
>BART1_0-u25331.007 3979 150831_barley_pseudomolecules AACAGCTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTAAT CAACTGAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGGAACTCATTCAGCAAATG GCAAATGTACAGTACACTGAGAACATGACTGATGAACAGGTTGATGCTATGGCAGGAAGT GAAACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTGAAT AAGTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCAATT CCTCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCCACA TATATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTATGCC GAGTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTGGAA GATCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCTGTA ATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAATGAA GAAGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAGTTA ATCATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGGAAC GGCCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCATTTT CCAAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTTGAA GATAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGAATC CAAGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTATCA GTGCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCACTG AAGATCAACATGGAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATGCAG GATGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTTTTC AACACGGTGAATCATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGTTGT TGTACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATGGCC TACCATTGGAAGGTTCATTGGAAATGGAGTGGAAGAATTACCAAGGTGCTTAATCAATGT ATGGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTATTGTGCTCACAAAGATAACT AGTATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGAGAAAAGGGTTGCGAAGCTA AAGGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGGCC GCTCGCAAGGTAGAGTTCATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCACCTTGATCT GAAGCCAGTGCTTGCAAAACCTATTGCTGGAAATCAGTATGCAGATCCCTCGACAGCAAA AGATCATAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAAAATGCAAT GAAGCCTGATGCTCAACATAAGAAGAATGCCTCAACTACAAACGGGTCTGATAGTCAAAT ACCATCTTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGATGAACCTCC AAAACTTTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCCGAGACAAG AGCGTCACAAAAGCGTGCTGTACACAATGCTGCAAAGGTATCTAAGCATGATGTGGTGAA GGAAGATGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTAATCAACAAGCCTCTGCTAT TCCTGTTGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTGTGCTGGATACTAATCCCAC TAGTCCGTTGGTTGGCACAAATGGTAATGTACATCCGGCACCACGAAAGCAAAAAAGATC TGTCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCG GGATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGACCCGCGATCAGT AGATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACAAAACCTAATTCG GACAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCATAGAGAAAAAGC AGATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAACAGACAGATCATT GGAAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGA AGACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGACCGAGCACATAC TATTAAGAATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGC ACATACTATTAAGCATGAACCCATAGACCGAGCACATACTTCTGACGAACGCTTCCGAGG GCAAAGCTTGCCACCACCTCCACCTCTTCCAACTAGTTTTGTACCCCAATCAGTCGCTGC TAACCGAAGAGATGAAGACATTGACCGAAGGGGGAGCAGCACCAGGCATACACAGCGGTT GTCTCCCAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAGGAGAATGCTCCGCTGTTGCA GGATGATGGGAAGCACAGGAGAGAGGAAGATCTCCGGGATAGAAAGCGTGAAGATAGGGA TGTTTCATCAAGCAAGGTAGACGACAGGGATAGGGACAAAGGTAATACTGTGAAGGAAGA TAGTGATCCTAATAGTGCATCCAAACGTCGAAAGATTAAAAGAGAACAGTCTGCTTTGGA GGCTGGGGAATACGCGCCTTCTGCTCCACAGCCTCCGAGCGTTGGACCTGGTAACTCACA GTATGAAATACGAGAGAGAGAAAGAAAGGGTGCTATTTCACAGCATCGTCCATCACATGC TGATGACCTTCCTAGGATGCATGCCAAGGATTCAACAAGCAAGACAAGTCGTAGAGAGGC TGACCAGTAAGTTTAGGAAACAATGATCTCATTGAACCATGCATTACAACAGTTTCCACT TTGCAAACGCATGATAGAGAATGGGAAGAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGG AAGCATCGGAAGTAGGTTCATGCGGGTGTCTTGATCATTCTCACATATCAAGGTGTTTCA CTTGGCGATGTGCACCTGCGAACAAGTCGCTTTCTTGTAGGAGGAAAATGTATCTGGCAT ATTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGGTTTGCTGGGGCTG AAGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTATCCAGATGCAAAT TATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAGGTCGTTATAAACA TTTTAGCAATGTGGAATGTAAGGAAGAGTACATGGGCCATACCATTAACTTAGACGGATT TGCTGTAAACAAGGATGAGCAGTTTTTCGCCCAGCTATTTTTTGTATTTTATTTTGTACT AAATGCAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTCCTTTTTCTGCACCGTCTAGGA GGAATAGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATGTACAGTTACAATGGTCGCATG AACCATCGTGTTCTAGATGTTAAACTGAGATGGTTGCATAAACCGTCGTGTTCTAAATGT TAACTGAGATGGTTGCATGAACTGTTGTGTTCCACTTCCTCCGTTCTTAAATACAAGTCC TTTTAGATATTTTACCGTG
Protein Sequence (548 aa)
>BART1_0-u25331.007 548 150831_barley_pseudomolecules MGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNASTTN GSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNAAKVS KHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNVHPAP RKQKRSVAVEEQERTGKRRKGEIEGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASE EQNLIRTEKLKEKFDEKYERDHREKADRSERRRGEDVVERPTDRSLERRERSIEKMQERV PEKGREDRNKEERNKIKHEPIDRAHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTS DERFRGQSLPPPPPLPTSFVPQSVAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEE NAPLLQDDGKHRREEDLRDRKREDRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKR EQSALEAGEYAPSAPQPPSVGPGNSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSK TSRREADQ