- Transcript BART1_0-u25331.003
- Transcript IDBART1_0-u25331.003
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779198 | + |
| chr3H | 2 | 679780077 | 679779949 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679782577 | 679782473 | + |
| chr3H | 8 | 679783932 | 679783777 | + |
| chr3H | 9 | 679784080 | 679784000 | + |
| chr3H | 10 | 679784262 | 679784187 | + |
| chr3H | 11 | 679784610 | 679784345 | + |
| chr3H | 12 | 679785333 | 679785100 | + |
| chr3H | 13 | 679786251 | 679785445 | + |
| chr3H | 14 | 679786764 | 679786475 | + |
| chr3H | 15 | 679788728 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.84231 | 0.0015767 |
| morex | ETI | 0.527609 | 0.0000104858 | 0.981019 |
| morex | LEA | 0.000638033 | 0.351027 | 0.87769 |
| morex | EPI | 0 | 0 | 0.0000075409 |
| morex | ROO | 2.8046 | 0.776319 | 0.838955 |
| morex | ROO2 | 3.5648 | 0.0031631 | 0.00000126498 |
| morex | NOD | 0.000248167 | 0.177871 | 2.78326 |
| morex | RAC | 0.0328113 | 0.0000000229769 | 2.60507 |
| morex | INF1 | 12.1014 | 5.32007 | 3.08291 |
| morex | INF2 | 0.402144 | 0.00504875 | 0.000000177068 |
| morex | CAR5 | 1.30415 | 0.00000508849 | 0.15532 |
| morex | CAR15 | 7.32846 | 0.660044 | 5.34228 |
| morex | LEM | 0.00000595353 | 0.79971 | 0.903756 |
| morex | LOD | 0.0000123806 | 0.0000000106589 | 0.00003307 |
| morex | PAL | 0.0000441517 | 1.08631 | 0 |
| morex | SEN | 2.85718 | 0.84144 | 0.00000000625398 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +2 | 0.0 | 1634 | 898/1147 (78%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g58697.3.p | +2 | 0.0 | 1853 | 979/1121 (87%) | pacid=32780757 transcript=Bradi2g58697.3 locus=Bradi2g58697 ID=Bradi2g58697.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4595 bp)
>BART1_0-u25331.003 4595 150831_barley_pseudomolecules CTACTATTTAAAATGCTTTGAGCTTTTGACATTTTTCTCTGTTGTGGTGGTTAGCAGCAA ACTAAATGTAACGAATATCTGCGTAGGATGCAATTTCTTTTGAATAAGTATAACAAAGAT TTCTGTACTTGCATTCTTGCATCGTAAGCTAAGCTTGCTATACATTATGTCGAACACTCG TGACAATGATTTTAGATATGCTAATGCAGCATTAAGTAACCGATCTACAACCTAAATATT TAGAGGTTCACCTATTGTTTTACCACTAAGGACCCCCTGCATATTCTTGAGTTCCCCTCT CCCCATTTGTTTGCTCATTCTGACATCGCGTCTACAGAAGTGTACAAGAAAATATCATCG ATTTGCCAAGACTCCAGGTCCTTGTTAATATTTGTTGATCATATTTGATAATTACGGCTC TTTGGAAAAGTCTTTAATCTTAATGTTTTGAAAATGCAAGCAATAGTTCTATATATCCTT CTAATCACTGGGGGTGCTTGTGTTTCCCCTTCCAGTATTGTTAGTCTTTAATCTTCATCT TTATGCTTCTATTCTGAACCAACAAACTTTTAACAGCTGCAAGAAGCATCTTTCCATGGA GCTTAAATGCCTTTTCCAATACATAGTTAATCAACTGAAGAAAGGATTGGGCACTGAGCT TGTTGTACTTGAGGAACTCATTCAGCAAATGGCAAATGTACAGTACACTGAGAACATGAC TGATGAACAGGTTGATGCTATGGCAGGAAGTGAAACATTGCGGCTTCAATCTTCGCTGTT TGGATCAACACGGAACTATAAGGTCCTGAATAAGTCTACTAACAAATTGCGGGATTCTTT GCTTCCAAAAGATGAACCTAAACTGGCAATTCCTCTACTACTGCTCGTTGCCCAGCACAG ATCCAAGATTATAATAAATGCAGATGCCACATATATCAAAATGGTTAGCGAGCAGTTTGA TAGATGCCATGGAATACTACTTCAGTATGCCGAGTTTCTTTCAAGTGCTGTAACTTCATC AACCTATGTTCAGCTAGTACCTCCGCTGGAAGATCTCGTTTATAAATATCATATCGAGCC AGATATTGCTTTTCTTATATACCGCCCTGTAATGAGGCTTTTCAAAAGCGCTAATGGTGG CGAGGCCTGTTGGCCTCTGGATGACAATGAAGAAGGGGAGTCTGTATCATGTGATGAAAT GATCTTGCATGGTGATTCATCTCAGAAGTTAATCATGTGGTCAGATCTTCTCAACACAAT CCGAACAATTTTGCCAGCAAAAGCCTGGAACGGCCTTTCACCCGAATTGTATGCTACTTT CTGGGGTTTAACACTGTATGATCTTCATTTTCCAAAAGATCGTTATGATGCAGAAATCAA GAAGCTGCATGAAAATCTCAAACAACTTGAAGATAACTCAGATAACTCTAGCATTGCAAT ATCAAGACGTAAGAAGGATAAGGAGAGAATCCAAGATTTGCTGGACAAATTGAACAATGA ATCTGACAAGCATCAGCACCATGTTCTATCAGTGCTCCAAAGGCTAACCCGTGAAAAGGA TAAATGGCTGAGTTCCAGTCCGGACGCACTGAAGATCAACATGGAATTTCTCCAGCGTTG CATATATCCACGCTGTGTTCTTAGCATGCAGGATGCTGTATATTGTGCTACATTCGTCCA GATGATGCATTCACTTGGGACTCCATTTTTCAACACGGTGAATCATATAGATGTTTTCAT CTGCAAGACACTACAGCCAATGATCTGTTGTTGTACAGAATATGAGGCTGGCAGGCTGGG AAGGTTTCTTCATGAGACCCTGAAGATGGCCTACCATTGGAAGAGTGACGAATCAATATA TGAGCGTGAATGTGGAAATAAGCCGGGATTCGCTGTATACTTCAGATTTCCAAATAGTCA ACGCGTATCTTATCCTCAGTTTGTTAAAGTTCATTGGAAATGGAGTGGAAGAATTACCAA GGTGCTTAATCAATGTATGGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTATTGT GCTCACAAAGATAACTAGTATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGAGAA AAGGGTTGCGAAGCTAAAGGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGGTGT AGCTGCTGCTCTGGCCGCTCGCAAGAGTTCATGGGTGTCTGAAGAAGAGTTTGGCATGGG TCACCTTGATCTGAAGCCAGTGCTTGCAAAACCTATTGCTGGAAATCAGTATGCAGATCC CTCGACAGCAAAAGATCATAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATGAAAGGTC AGAAAATGCAATGAAGCCTGATGCTCAACATAAGAAGAATGCCTCAACTACAAACGGGTC TGATAGTCAAATACCATCTTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCACGCGGTGC AGATGAACCTCCAAAACTTTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTACTGCAGA ACCCGAGACAAGAGCGTCACAAAAGCGTGCTGTACACAATGCTGCAAAGGTATCTAAGCA TGATGTGGTGAAGGAAGATGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTAATCAACA AGCCTCTGCTATTCCTGTTGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTGTGCTGGA TACTAATCCCACTAGTCCGTTGGTTGGCACAAATGGTAATGTACATCCGGCACCACGAAA GCAAAAAAGATCTGTCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGA GATTGAAGGCCGGGATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGA CCCGCGATCAGTAGATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACA AAACCTAATTCGGACAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCA TAGAGAAAAAGCAGATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAAC AGACAGATCATTGGAAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGA AAAAGGAAGAGAAGACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGA CCGAGCACATACTATTAAGAATGAACCCATAGACCGAGCACATACTATTAAGCATGAACC CATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCACATACTTCTGACGA ACGCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTCTTCCAACTAGTTTTGTACCCCA ATCAGTCGCTGCTAACCGAAGAGATGAAGACATTGACCGAAGGGGGAGCAGCACCAGGCA TACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAGGAGAATGC TCCGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGGAAGATCTCCGGGATAGAAAGCG TGAAGATAGGGATGTTTCATCAAGCAAGGTAGACGACAGGGATAGGGACAAAGGTAATAC TGTGAAGGAAGATAGTGATCCTAATAGTGCATCCAAACGTCGAAAGATTAAAAGAGAACA GTCTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTCCACAGCCTCCGAGCGTTGGACC TGGTAACTCACAGTATGAAATACGAGAGAGAGAAAGAAAGGGTGCTATTTCACAGCATCG TCCATCACATGCTGATGACCTTCCTAGGATGCATGCCAAGGATTCAACAAGCAAGACAAG TCGTAGAGAGGCTGACCAAACGCATGATAGAGAATGGGAAGAGGAGAAGAGGCCAAGAAC TGAAGCAAAGAGGAAGCATCGGAAGTAGGTTCATGCGGGTGTCTTGATCATTCTCACATA TCAAGGTGTTTCACTTGGCGATGTGCACCTGCGAACAAGTCGCTTTCTTGTAGGAGGAAA ATGTATCTGGCATATTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGG TTTGCTGGGGCTGAAGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTA TCCAGATGCAAATTATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAG GTCGTTATAAACATTTTAGCAATGTGGAATGTAAGGAAGAGTACATGGGCCATACCATTA ACTTAGACGGATTTGCTGTAAACAAGGATGAGCAGTTTTTCGCCCAGCTATTTTTTGTAT TTTATTTTGTACTAAATGCAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTCCTTTTTCT GCACCGTCTAGGAGGAATAGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATGTACAGTTA CAATGGTCGCATGAACCATCGTGTTCTAGATGTTAAACTGAGATGGTTGCATAAACCGTC GTGTTCTAAATGTTAACTGAGATGGTTGCATGAACTGTTGTGTTCCACTTCCTCCGTTCT TAAATACAAGTCCTTTTAGATATTTTACCGTGAAC
Protein Sequence (1110 aa)
>BART1_0-u25331.003 1110 150831_barley_pseudomolecules MELKCLFQYIVNQLKKGLGTELVVLEELIQQMANVQYTENMTDEQVDAMAGSETLRLQSS LFGSTRNYKVLNKSTNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKMVSEQ FDRCHGILLQYAEFLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLFKSAN GGEACWPLDDNEEGESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSPELYA TFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDKLN NESDKHQHHVLSVLQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVYCATF VQMMHSLGTPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKSDES IYERECGNKPGFAVYFRFPNSQRVSYPQFVKVHWKWSGRITKVLNQCMESKEYMEIRNAL IVLTKITSIFPVMRKSGINIEKRVAKLKGDEREDLKVLATGVAAALAARKSSWVSEEEFG MGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNASTTN GSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNAAKVS KHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNVHPAP RKQKRSVAVEEQERTGKRRKGEIEGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASE EQNLIRTEKLKEKFDEKYERDHREKADRSERRRGEDVVERPTDRSLERRERSIEKMQERV PEKGREDRNKEERNKIKHEPIDRAHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTS DERFRGQSLPPPPPLPTSFVPQSVAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEE NAPLLQDDGKHRREEDLRDRKREDRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKR EQSALEAGEYAPSAPQPPSVGPGNSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSK TSRREADQTHDREWEEEKRPRTEAKRKHRK