- Transcript BART1_0-u25331.002
- Transcript IDBART1_0-u25331.002
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679778927 | + |
| chr3H | 2 | 679780077 | 679779949 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679783932 | 679783777 | + |
| chr3H | 8 | 679784080 | 679784000 | + |
| chr3H | 9 | 679784262 | 679784187 | + |
| chr3H | 10 | 679784610 | 679784345 | + |
| chr3H | 11 | 679785333 | 679785100 | + |
| chr3H | 12 | 679786251 | 679785445 | + |
| chr3H | 13 | 679786764 | 679786475 | + |
| chr3H | 14 | 679788763 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.000000000996738 |
| morex | ETI | 0.000000000265586 | 0 | 0 |
| morex | LEA | 0 | 0 | 0.00000891016 |
| morex | EPI | 0 | 0.0000333194 | 0.000012315 |
| morex | ROO | 0 | 0.000355968 | 0 |
| morex | ROO2 | 0.000000023454 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.00333989 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.000000000109469 |
| morex | LOD | 0.00000000217679 | 0 | 0.000000945303 |
| morex | PAL | 0 | 0 | 0.0000129712 |
| morex | SEN | 0.000000056515 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +3 | 0.0 | 1548 | 868/1147 (76%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+3 | 0.0 | 818 | 511/1022 (50%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.4.p | +3 | 0.0 | 1780 | 946/1086 (87%) | pacid=32780758 transcript=Bradi2g58697.4 locus=Bradi2g58697 ID=Bradi2g58697.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4796 bp)
>BART1_0-u25331.002 4796 150831_barley_pseudomolecules GGATGATCTGGAAACATAGGAATGCGTGTGTATTTGATCATGCCACTCCGTCGCTCTCCG AGCTCGCGGATGGGATCAAAGATGAGATGAGATGTTGGGCTAGAGCTGGGGACAAGGGGC TTAGGGTAGTCTTGCCCCCATCCTGGGATGTACATTGAGTTACTTGTAATCTGTTGTAAC CGTCTCCTCTGAGACTGACTTTCCCTCTTTTCAATACAAAGAAACGCACATCTCTGCGTT TTCTCGAAAAAAAAGAACAAACAGTGATCTGCTACTATTTAAAATGCTTTGAGCTTTTGA CATTTTTCTCTGTTGTGGTGGTTAGCAGCAAACTAAATGTAACGAATATCTGCGTAGGAT GCAATTTCTTTTGAATAAGTATAACAAAGATTTCTGTACTTGCATTCTTGCATCGTAAGC TAAGCTTGCTATACATTATGTCGAACACTCGTGACAATGATTTTAGATATGCTAATGCAG CATTAAGTAACCGATCTACAACCTAAATATTTAGAGGTTCACCTATTGTTTTACCACTAA GGACCCCCTGCATATTCTTGAGTTCCCCTCTCCCCATTTGTTTGCTCATTCTGACATCGC GTCTACAGAAGTGTACAAGAAAATATCATCGATTTGCCAAGACTCCAGGTCCTTGTTAAT ATTTGTTGATCATATTTGATAATTACGGCTCTTTGGAAAAGTCTTTAATCTTAATGTTTT GAAAATGCAAGCAATAGTTCTATATATCCTTCTAATCACTGGGGGTGCTTGTGTTTCCCC TTCCAGTATTGTTAGTCTTTAATCTTCATCTTTATGCTTCTATTCTGAACCAACAAACTT TTAACAGCTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTA ATCAACTGAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGGAACTCATTCAGCAAA TGGCAAATGTACAGTACACTGAGAACATGACTGATGAACAGGTTGATGCTATGGCAGGAA GTGAAACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTGA ATAAGTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCAA TTCCTCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCCA CATATATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTATG CCGAGTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTGG AAGATCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCTG TAATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAATG AAGAAGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAGT TAATCATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGGA ACGGCCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCATT TTCCAAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTTG AAGATAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGAA TCCAAGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTAT CAGTGCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCAC TGAAGATCAACATGGAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATGC AGGATGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTTT TCAACACGGTGAATCATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGTT GTTGTACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATGG CCTACCATTGGAAGGTTCATTGGAAATGGAGTGGAAGAATTACCAAGGTGCTTAATCAAT GTATGGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTATTGTGCTCACAAAGATAA CTAGTATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGAGAAAAGGGTTGCGAAGC TAAAGGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGG CCGCTCGCAAGAGTTCATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCACCTTGATCTGA AGCCAGTGCTTGCAAAACCTATTGCTGGAAATCAGTATGCAGATCCCTCGACAGCAAAAG ATCATAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAAAATGCAATGA AGCCTGATGCTCAACATAAGAAGAATGCCTCAACTACAAACGGGTCTGATAGTCAAATAC CATCTTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGATGAACCTCCAA AACTTTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCCGAGACAAGAG CGTCACAAAAGCGTGCTGTACACAATGCTGCAAAGGTATCTAAGCATGATGTGGTGAAGG AAGATGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTAATCAACAAGCCTCTGCTATTC CTGTTGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTGTGCTGGATACTAATCCCACTA GTCCGTTGGTTGGCACAAATGGTAATGTACATCCGGCACCACGAAAGCAAAAAAGATCTG TCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCGGG ATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGACCCGCGATCAGTAG ATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACAAAACCTAATTCGGA CAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCATAGAGAAAAAGCAG ATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAACAGACAGATCATTGG AAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAAG ACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGACCGAGCACATACTA TTAAGAATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCAC ATACTATTAAGCATGAACCCATAGACCGAGCACATACTTCTGACGAACGCTTCCGAGGGC AAAGCTTGCCACCACCTCCACCTCTTCCAACTAGTTTTGTACCCCAATCAGTCGCTGCTA ACCGAAGAGATGAAGACATTGACCGAAGGGGGAGCAGCACCAGGCATACACAGCGGTTGT CTCCCAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAGGAGAATGCTCCGCTGTTGCAGG ATGATGGGAAGCACAGGAGAGAGGAAGATCTCCGGGATAGAAAGCGTGAAGATAGGGATG TTTCATCAAGCAAGGTAGACGACAGGGATAGGGACAAAGGTAATACTGTGAAGGAAGATA GTGATCCTAATAGTGCATCCAAACGTCGAAAGATTAAAAGAGAACAGTCTGCTTTGGAGG CTGGGGAATACGCGCCTTCTGCTCCACAGCCTCCGAGCGTTGGACCTGGTAACTCACAGT ATGAAATACGAGAGAGAGAAAGAAAGGGTGCTATTTCACAGCATCGTCCATCACATGCTG ATGACCTTCCTAGGATGCATGCCAAGGATTCAACAAGCAAGACAAGTCGTAGAGAGGCTG ACCAAACGCATGATAGAGAATGGGAAGAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGGA AGCATCGGAAGTAGGTTCATGCGGGTGTCTTGATCATTCTCACATATCAAGGTGTTTCAC TTGGCGATGTGCACCTGCGAACAAGTCGCTTTCTTGTAGGAGGAAAATGTATCTGGCATA TTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGGTTTGCTGGGGCTGA AGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTATCCAGATGCAAATT ATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAGGTCGTTATAAACAT TTTAGCAATGTGGAATGTAAGGAAGAGTACATGGGCCATACCATTAACTTAGACGGATTT GCTGTAAACAAGGATGAGCAGTTTTTCGCCCAGCTATTTTTTGTATTTTATTTTGTACTA AATGCAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTCCTTTTTCTGCACCGTCTAGGAG GAATAGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATGTACAGTTACAATGGTCGCATGA ACCATCGTGTTCTAGATGTTAAACTGAGATGGTTGCATAAACCGTCGTGTTCTAAATGTT AACTGAGATGGTTGCATGAACTGTTGTGTTCCACTTCCTCCGTTCTTAAATACAAGTCCT TTTAGATATTTTACCGTGAACTACATATGAATGTATGTTCATCCATTTTACTTCGC
Protein Sequence (1075 aa)
>BART1_0-u25331.002 1075 150831_barley_pseudomolecules MELKCLFQYIVNQLKKGLGTELVVLEELIQQMANVQYTENMTDEQVDAMAGSETLRLQSS LFGSTRNYKVLNKSTNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKMVSEQ FDRCHGILLQYAEFLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLFKSAN GGEACWPLDDNEEGESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSPELYA TFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDKLN NESDKHQHHVLSVLQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVYCATF VQMMHSLGTPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKVHWK WSGRITKVLNQCMESKEYMEIRNALIVLTKITSIFPVMRKSGINIEKRVAKLKGDEREDL KVLATGVAAALAARKSSWVSEEEFGMGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSV EGRHERSENAMKPDAQHKKNASTTNGSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVK VLKPTAEPETRASQKRAVHNAAKVSKHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQ AADGVLDTNPTSPLVGTNGNVHPAPRKQKRSVAVEEQERTGKRRKGEIEGRDGDLAEHHT DKEKKLDPRSVDKFRSVDHERGASEEQNLIRTEKLKEKFDEKYERDHREKADRSERRRGE DVVERPTDRSLERRERSIEKMQERVPEKGREDRNKEERNKIKHEPIDRAHTIKNEPIDRA HTIKHEPIDRAHTIKHEPIDRAHTSDERFRGQSLPPPPPLPTSFVPQSVAANRRDEDIDR RGSSTRHTQRLSPRRDEKERWHLEENAPLLQDDGKHRREEDLRDRKREDRDVSSSKVDDR DRDKGNTVKEDSDPNSASKRRKIKREQSALEAGEYAPSAPQPPSVGPGNSQYEIRERERK GAISQHRPSHADDLPRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHRK