- Transcript BART1_0-u25331.001
- Transcript IDBART1_0-u25331.001
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679778927 | + |
| chr3H | 2 | 679780077 | 679779949 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679782577 | 679782473 | + |
| chr3H | 8 | 679783932 | 679783777 | + |
| chr3H | 9 | 679784080 | 679784000 | + |
| chr3H | 10 | 679784262 | 679784187 | + |
| chr3H | 11 | 679784610 | 679784345 | + |
| chr3H | 12 | 679786251 | 679785100 | + |
| chr3H | 13 | 679786764 | 679786475 | + |
| chr3H | 14 | 679788763 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.851851 | 0.000104627 |
| morex | ETI | 1.00001 | 3.31556 | 0.700474 |
| morex | LEA | 0.000000110453 | 0.0119504 | 1.96955 |
| morex | EPI | 0 | 0.208381 | 0.687439 |
| morex | ROO | 1.72125 | 0.0338733 | 0 |
| morex | ROO2 | 0.000280165 | 0.000804743 | 0.000071643 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 2.32319 | 0 | 0.0000120248 |
| morex | INF1 | 0.584239 | 1.20844 | 0.0106922 |
| morex | INF2 | 1.0712 | 1.37822 | 0 |
| morex | CAR5 | 1.37731 | 0 | 1.97649 |
| morex | CAR15 | 2.28448 | 0 | 1.76467 |
| morex | LEM | 0.000165966 | 0.0000000019544 | 0.488575 |
| morex | LOD | 0.716639 | 0 | 0.714864 |
| morex | PAL | 0 | 0.000000148925 | 0.30668 |
| morex | SEN | 0.0000133961 | 0.000102529 | 1.16084 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +3 | 0.0 | 1618 | 898/1184 (76%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g58697.1.p | +3 | 0.0 | 1924 | 1014/1158 (88%) | pacid=32780755 transcript=Bradi2g58697.1 locus=Bradi2g58697 ID=Bradi2g58697.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5012 bp)
>BART1_0-u25331.001 5012 150831_barley_pseudomolecules GGATGATCTGGAAACATAGGAATGCGTGTGTATTTGATCATGCCACTCCGTCGCTCTCCG AGCTCGCGGATGGGATCAAAGATGAGATGAGATGTTGGGCTAGAGCTGGGGACAAGGGGC TTAGGGTAGTCTTGCCCCCATCCTGGGATGTACATTGAGTTACTTGTAATCTGTTGTAAC CGTCTCCTCTGAGACTGACTTTCCCTCTTTTCAATACAAAGAAACGCACATCTCTGCGTT TTCTCGAAAAAAAAGAACAAACAGTGATCTGCTACTATTTAAAATGCTTTGAGCTTTTGA CATTTTTCTCTGTTGTGGTGGTTAGCAGCAAACTAAATGTAACGAATATCTGCGTAGGAT GCAATTTCTTTTGAATAAGTATAACAAAGATTTCTGTACTTGCATTCTTGCATCGTAAGC TAAGCTTGCTATACATTATGTCGAACACTCGTGACAATGATTTTAGATATGCTAATGCAG CATTAAGTAACCGATCTACAACCTAAATATTTAGAGGTTCACCTATTGTTTTACCACTAA GGACCCCCTGCATATTCTTGAGTTCCCCTCTCCCCATTTGTTTGCTCATTCTGACATCGC GTCTACAGAAGTGTACAAGAAAATATCATCGATTTGCCAAGACTCCAGGTCCTTGTTAAT ATTTGTTGATCATATTTGATAATTACGGCTCTTTGGAAAAGTCTTTAATCTTAATGTTTT GAAAATGCAAGCAATAGTTCTATATATCCTTCTAATCACTGGGGGTGCTTGTGTTTCCCC TTCCAGTATTGTTAGTCTTTAATCTTCATCTTTATGCTTCTATTCTGAACCAACAAACTT TTAACAGCTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTA ATCAACTGAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGGAACTCATTCAGCAAA TGGCAAATGTACAGTACACTGAGAACATGACTGATGAACAGGTTGATGCTATGGCAGGAA GTGAAACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTGA ATAAGTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCAA TTCCTCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCCA CATATATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTATG CCGAGTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTGG AAGATCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCTG TAATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAATG AAGAAGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAGT TAATCATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGGA ACGGCCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCATT TTCCAAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTTG AAGATAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGAA TCCAAGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTAT CAGTGCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCAC TGAAGATCAACATGGAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATGC AGGATGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTTT TCAACACGGTGAATCATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGTT GTTGTACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATGG CCTACCATTGGAAGAGTGACGAATCAATATATGAGCGTGAATGTGGAAATAAGCCGGGAT TCGCTGTATACTTCAGATTTCCAAATAGTCAACGCGTATCTTATCCTCAGTTTGTTAAAG TTCATTGGAAATGGAGTGGAAGAATTACCAAGGTGCTTAATCAATGTATGGAGTCAAAGG AATACATGGAAATCAGAAACGCCCTTATTGTGCTCACAAAGATAACTAGTATTTTTCCTG TGATGCGAAAAAGCGGTATCAACATCGAGAAAAGGGTTGCGAAGCTAAAGGGGGATGAGA GGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGGCCGCTCGCAAGAGTT CATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCACCTTGATCTGAAGCCAGTGCTTGCAA AACCTATTGCTGGAAATCAGTATGCAGATCCCTCGACAGCAAAAGATCATAGCGTTCGTG CAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAAAATGCAATGAAGCCTGATGCTCAAC ATAAGAAGAATGCCTCAACTACAAACGGGTCTGATAGTCAAATACCATCTTCCTCTGCAC AAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGATGAACCTCCAAAACTTTTGTCCGATG ATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCCGAGACAAGAGCGTCACAAAAGCGTG CTGTACACAATGCTGCAAAGGTATCTAAGCATGATGTGGTGAAGGAAGATGCAAAACCTG GGAGATCTACTAGCAGGGGTCTTAATCAACAAGCCTCTGCTATTCCTGTTGACAAAGAAG TATTGTCTCAGGCAGCTGATGGTGTGCTGGATACTAATCCCACTAGTCCGTTGGTTGGCA CAAATGGTAATGTACATCCGGCACCACGAAAGGTATCAGCATCCTCCCAAAGATCAACAG TATTGGCTGCACATAGCGGTGGAACAGCTAATCCCACCGGTGAAGGTGAATCTGCTGACT TGATTGATTCTACCGTGAAACAGCAAAAAAGATCTGTCGCCGTTGAAGAACAAGAGAGGA CAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCGGGATGGTGACTTGGCAGAACACCATA CGGACAAAGAAAAAAAATTGGACCCGCGATCAGTAGATAAATTTCGTTCTGTGGATCATG AGAGAGGTGCTAGTGAGGAACAAAACCTAATTCGGACAGAGAAATTAAAAGAAAAGTTCG ATGAGAAATATGAAAGAGATCATAGAGAAAAAGCAGATCGGTCTGAGAGGCGCCGTGGAG AAGACGTGGTTGAGAGACCAACAGACAGATCATTGGAAAGGAGAGAGCGTTCTATTGAAA AGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAAGACAGGAATAAGGAGGAGAGGAACA AAATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGAATGAACCCATAGACCGAG CACATACTATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAG ACCGAGCACATACTTCTGACGAACGCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTC TTCCAACTAGTTTTGTACCCCAATCAGTCGCTGCTAACCGAAGAGATGAAGACATTGACC GAAGGGGGAGCAGCACCAGGCATACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAA GGTGGCACTTGGAGGAGAATGCTCCGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGG AAGATCTCCGGGATAGAAAGCGTGAAGATAGGGATGTTTCATCAAGCAAGGTAGACGACA GGGATAGGGACAAAGGTAATACTGTGAAGGAAGATAGTGATCCTAATAGTGCATCCAAAC GTCGAAAGATTAAAAGAGAACAGTCTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTC CACAGCCTCCGAGCGTTGGACCTGGTAACTCACAGTATGAAATACGAGAGAGAGAAAGAA AGGGTGCTATTTCACAGCATCGTCCATCACATGCTGATGACCTTCCTAGGATGCATGCCA AGGATTCAACAAGCAAGACAAGTCGTAGAGAGGCTGACCAAACGCATGATAGAGAATGGG AAGAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGGAAGCATCGGAAGTAGGTTCATGCGG GTGTCTTGATCATTCTCACATATCAAGGTGTTTCACTTGGCGATGTGCACCTGCGAACAA GTCGCTTTCTTGTAGGAGGAAAATGTATCTGGCATATTTGAACCATTCAGTGTGTATGCC TCACTCCATGGTTTTAGAAAGGTTTGCTGGGGCTGAAGAGGATCCACATGATCAATCCTT CAGCAGTACTCCGTCAATGCTATCCAGATGCAAATTATTGCAAACATTGTTGATTGCAAG GAACATATGGCCTGTTATACAGGTCGTTATAAACATTTTAGCAATGTGGAATGTAAGGAA GAGTACATGGGCCATACCATTAACTTAGACGGATTTGCTGTAAACAAGGATGAGCAGTTT TTCGCCCAGCTATTTTTTGTATTTTATTTTGTACTAAATGCAGACAGTTTTGTTGTGGGA GGCATTTGTGCTTCCTTTTTCTGCACCGTCTAGGAGGAATAGCAGGGTGGCGGGTTGTGA GTAGGTTGTACATGTACAGTTACAATGGTCGCATGAACCATCGTGTTCTAGATGTTAAAC TGAGATGGTTGCATAAACCGTCGTGTTCTAAATGTTAACTGAGATGGTTGCATGAACTGT TGTGTTCCACTTCCTCCGTTCTTAAATACAAGTCCTTTTAGATATTTTACCGTGAACTAC ATATGAATGTATGTTCATCCATTTTACTTCGC
Protein Sequence (1147 aa)
>BART1_0-u25331.001 1147 150831_barley_pseudomolecules MELKCLFQYIVNQLKKGLGTELVVLEELIQQMANVQYTENMTDEQVDAMAGSETLRLQSS LFGSTRNYKVLNKSTNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKMVSEQ FDRCHGILLQYAEFLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLFKSAN GGEACWPLDDNEEGESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSPELYA TFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDKLN NESDKHQHHVLSVLQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVYCATF VQMMHSLGTPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKSDES IYERECGNKPGFAVYFRFPNSQRVSYPQFVKVHWKWSGRITKVLNQCMESKEYMEIRNAL IVLTKITSIFPVMRKSGINIEKRVAKLKGDEREDLKVLATGVAAALAARKSSWVSEEEFG MGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNASTTN GSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNAAKVS KHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNVHPAP RKVSASSQRSTVLAAHSGGTANPTGEGESADLIDSTVKQQKRSVAVEEQERTGKRRKGEI EGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASEEQNLIRTEKLKEKFDEKYERDHR EKADRSERRRGEDVVERPTDRSLERRERSIEKMQERVPEKGREDRNKEERNKIKHEPIDR AHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTSDERFRGQSLPPPPPLPTSFVPQS VAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEENAPLLQDDGKHRREEDLRDRKRE DRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKREQSALEAGEYAPSAPQPPSVGPG NSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSKTSRREADQTHDREWEEEKRPRTE AKRKHRK