- Transcript BART1_0-u23872.002
- Transcript IDBART1_0-u23872.002
- Gene IDBART1_0-u23872
Barley RTD
Exon Structure of BART1_0-u23872.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 640209907 | 640209626 | + |
| chr3H | 2 | 640211905 | 640210811 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.36998 | 0.475913 | 0.837845 |
| morex | ETI | 0.791516 | 0.308551 | 0.99368 |
| morex | LEA | 0.406472 | 1.15005 | 0.745345 |
| morex | EPI | 0.876599 | 1.97995 | 2.02316 |
| morex | ROO | 0.291484 | 0.376165 | 1.50762 |
| morex | ROO2 | 1.78269 | 2.3797 | 1.67907 |
| morex | NOD | 0 | 0.0138838 | 1.49989 |
| morex | RAC | 1.43378 | 3.06462 | 1.88961 |
| morex | INF1 | 0.766363 | 3.34716 | 0.66623 |
| morex | INF2 | 1.62921 | 2.27811 | 1.71084 |
| morex | CAR5 | 1.7398 | 0.998805 | 0.244356 |
| morex | CAR15 | 0.931476 | 0.156024 | 0.220144 |
| morex | LEM | 0.752434 | 0.562966 | 1.46204 |
| morex | LOD | 2.20967 | 2.79617 | 2.91177 |
| morex | PAL | 3.88088 | 1.26022 | 3.17631 |
| morex | SEN | 2.66561 | 1.5445 | 2.13791 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g21390.1 | +3 | 6e-32 | 119 | 59/66 (89%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1377 bp)
>BART1_0-u23872.002 1377 150831_barley_pseudomolecules GAACCGAGTTCCTAACTTCGAATCCTGTCTTCCTCCAATTTTTGTGAGGAATTAACCAGT TTCCTTTTGTTTCTTTTGCGGCTTCTGTGTTTCTTCCTGGGCCGGCCGGCCCACGAGGAG GGGCGCATAGGAGCTCCCGTTTCCGCGAGCCCGCACACGCGCGTGCAAAGTCTCGCATTT CCCCTGCTGCCCCCGACGCTCTCTTCCTCCTCTGGTGCGACACAGGTGGATCTCGCCGTC CCTGCTACGTCTTCGCCGCCGCATCTCGTCGCCGGTGCCAAGAGATGGGCTTGTGGATGC TGCTGGAGGGTTTTTTGCTTCTTGCAAATTCTTTGGCCATCCTGAATGAAGACCGCTTTC TTGGTCCCAGGGGCTGGAGCATGCCTGAAGTTTCAGGAAATGGGCAAACAAAGTCCTTGA AGGGGCAGATCGTGGGGCTCATCTACGCCACTCAGTTTTTGCGGATGCCCTTGATAGCGC TTAATATTCTTATCATTGTTGTGAAATTGGTGTCAGGCTGAGGATCTTTGTCGCGTCACT GCTGTTGGGTTGAACTGATTTCAGTTCCAGCATTATGTACAAGCTAATCATGTTCAGAAG TTGCTGGAAGGATGTTCATGCTGACATGAATGTGGCCTGTTGGTTTTGTTGCTGTAAATC CCTCTGACTCTGAGGGTATCTTTCCTCCTGTATGACTTCTGATTCAGTATGCACTATTGC ACTTACGATGTCTTGATCACCATGTAAATATTCAATCTAATTTAAACGTTGGCACTGCTA ACGGTTAAAGACATTATCTGGTGACAGAACCAATGTTTTCTGCAGTTTTGCCTTATTTGC TGTCTAGTTGATTGTATATCCTTTTCCTTGGGAGTCATTTTGAGCCCAGTCTTTTGTTTT AGGTTGTTTTTTGTGGAGTTGCTGTCTGTTGTAATTCATTCTACTGGCACTACTTTTATA TTTAAACTCTTCATGGGCTTCTCAACTTTAGATGATGATCAAGTGAAGACGTCACCGGGT TGACCTGATCGTCCTGGATGCATACTGATGTAGTCTAGTTCCTAATGTTAGACAAAACCT CCAATGTGTTATGTTGCCTGTTTGTAGCTGCTGCTGTTGGCTGCTACCTCGGTTTGCCCT GGCAAGGCTATATGGAGCTGTGCTATCTGTTTGATGTTGCTTAGTTTCCTCAATGACTAG TCTCAATCTCAGTGTGCTAAATTGGAATGTACATGGGTTGAACTGTCGTAACAGACGAGC CACTACCAATGCAAGTATTGCCGCTTCTGTGTGCCGTTTTGCTGAAAGAATTTGCAGAGC GCCCTGCTGTTGGTACGTGAGTGGGATTCTTCTGCTAGGGGATGAAGACAATGTCCG
Protein Sequence ( aa)
>BART1_0-u23872.002 150831_barley_pseudomolecules