Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU3Hr1G09279072.6++1655-625Containing




Transcripts from Gene BART1_0-u23872

TranscriptLength(bp)Description
BART1_0-u23872.00114991499 bp MSTRG.23872.1 MSTRG.23872
BART1_0-u23872.00213771377 bp MSTRG.23872.2 MSTRG.23872



Exon Structure of BART1_0-u23872


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g21390.1 +2 7e-32 119 59/66 (89%) protein|expressed protein
TAIR PP10None-----
BRACH PP3None-----




GO Annotation

There is no GO annotation for this gene




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons