- Transcript BART1_0-u23872.001
- Transcript IDBART1_0-u23872.001
- Gene IDBART1_0-u23872
Barley RTD
Exon Structure of BART1_0-u23872.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 640209907 | 640209626 | + |
| chr3H | 2 | 640210375 | 640210254 | + |
| chr3H | 3 | 640211905 | 640210811 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.3992 | 0.649842 | 0.894008 |
| morex | ETI | 0.000682855 | 0.439859 | 0.000000166941 |
| morex | LEA | 0.6154 | 1.13862 | 0.707987 |
| morex | EPI | 0 | 0.0119117 | 0.00775426 |
| morex | ROO | 0.365031 | 0.475903 | 0 |
| morex | ROO2 | 0.0000223767 | 0.00145746 | 0.0000141799 |
| morex | NOD | 3.52717 | 2.21316 | 0 |
| morex | RAC | 1.65419 | 0.0106642 | 2.36917 |
| morex | INF1 | 1.90269 | 0.00500744 | 0.873947 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 1.19885 | 0.784599 |
| morex | CAR15 | 0 | 0.360556 | 0.541436 |
| morex | LEM | 1.17182 | 0.698997 | 0.0089989 |
| morex | LOD | 0.00185948 | 0.291478 | 0.000141475 |
| morex | PAL | 0.00173724 | 0.0158238 | 0.00000000311065 |
| morex | SEN | 0.000000257815 | 0.000687575 | 0.00425316 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g21390.1 | +2 | 7e-32 | 119 | 59/66 (89%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1499 bp)
>BART1_0-u23872.001 1499 150831_barley_pseudomolecules GAACCGAGTTCCTAACTTCGAATCCTGTCTTCCTCCAATTTTTGTGAGGAATTAACCAGT TTCCTTTTGTTTCTTTTGCGGCTTCTGTGTTTCTTCCTGGGCCGGCCGGCCCACGAGGAG GGGCGCATAGGAGCTCCCGTTTCCGCGAGCCCGCACACGCGCGTGCAAAGTCTCGCATTT CCCCTGCTGCCCCCGACGCTCTCTTCCTCCTCTGGTGCGACACAGGTGGATCTCGCCGTC CCTGCTACGTCTTCGCCGCCGCATCTCGTCGCCGGTGCCAAGTTGAATCCTACCAGATCT TTATTCGTCGTTACCAATCTCAGTTACCCTGAAGCGATACTACTCCTAGCAGTTTATTTT CGACAAGAATTGGGCCCTTTGCATCGCGCTAGGCCTGCCCCTTGAGATGGGCTTGTGGAT GCTGCTGGAGGGTTTTTTGCTTCTTGCAAATTCTTTGGCCATCCTGAATGAAGACCGCTT TCTTGGTCCCAGGGGCTGGAGCATGCCTGAAGTTTCAGGAAATGGGCAAACAAAGTCCTT GAAGGGGCAGATCGTGGGGCTCATCTACGCCACTCAGTTTTTGCGGATGCCCTTGATAGC GCTTAATATTCTTATCATTGTTGTGAAATTGGTGTCAGGCTGAGGATCTTTGTCGCGTCA CTGCTGTTGGGTTGAACTGATTTCAGTTCCAGCATTATGTACAAGCTAATCATGTTCAGA AGTTGCTGGAAGGATGTTCATGCTGACATGAATGTGGCCTGTTGGTTTTGTTGCTGTAAA TCCCTCTGACTCTGAGGGTATCTTTCCTCCTGTATGACTTCTGATTCAGTATGCACTATT GCACTTACGATGTCTTGATCACCATGTAAATATTCAATCTAATTTAAACGTTGGCACTGC TAACGGTTAAAGACATTATCTGGTGACAGAACCAATGTTTTCTGCAGTTTTGCCTTATTT GCTGTCTAGTTGATTGTATATCCTTTTCCTTGGGAGTCATTTTGAGCCCAGTCTTTTGTT TTAGGTTGTTTTTTGTGGAGTTGCTGTCTGTTGTAATTCATTCTACTGGCACTACTTTTA TATTTAAACTCTTCATGGGCTTCTCAACTTTAGATGATGATCAAGTGAAGACGTCACCGG GTTGACCTGATCGTCCTGGATGCATACTGATGTAGTCTAGTTCCTAATGTTAGACAAAAC CTCCAATGTGTTATGTTGCCTGTTTGTAGCTGCTGCTGTTGGCTGCTACCTCGGTTTGCC CTGGCAAGGCTATATGGAGCTGTGCTATCTGTTTGATGTTGCTTAGTTTCCTCAATGACT AGTCTCAATCTCAGTGTGCTAAATTGGAATGTACATGGGTTGAACTGTCGTAACAGACGA GCCACTACCAATGCAAGTATTGCCGCTTCTGTGTGCCGTTTTGCTGAAAGAATTTGCAGA GCGCCCTGCTGTTGGTACGTGAGTGGGATTCTTCTGCTAGGGGATGAAGACAATGTCCG
Protein Sequence ( aa)
>BART1_0-u23872.001 150831_barley_pseudomolecules