- Transcript BART1_0-u21412.005
- Transcript IDBART1_0-u21412.005
- Gene IDBART1_0-u21412
Barley RTD
Exon Structure of BART1_0-u21412.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469768956 | 469768311 | + |
| chr3H | 2 | 469770408 | 469769062 | + |
| chr3H | 3 | 469770835 | 469770531 | + |
| chr3H | 4 | 469772180 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.56143 | 6.33805 | 6.20864 |
| morex | ETI | 8.0904 | 7.2947 | 6.79476 |
| morex | LEA | 6.78124 | 4.60638 | 3.20748 |
| morex | EPI | 13.9794 | 17.9572 | 18.7098 |
| morex | ROO | 1.62747 | 5.52439 | 2.80629 |
| morex | ROO2 | 23.0394 | 27.5363 | 27.2787 |
| morex | NOD | 30.2539 | 13.4214 | 20.2254 |
| morex | RAC | 47.4701 | 55.277 | 54.5841 |
| morex | INF1 | 20.4991 | 13.5663 | 14.2215 |
| morex | INF2 | 11.1067 | 5.63426 | 12.9741 |
| morex | CAR5 | 14.5776 | 8.69017 | 12.3116 |
| morex | CAR15 | 3.77505 | 3.55193 | 4.33133 |
| morex | LEM | 49.6497 | 51.5671 | 52.7803 |
| morex | LOD | 55.8869 | 45.3669 | 44.2284 |
| morex | PAL | 41.7945 | 36.3605 | 35.4684 |
| morex | SEN | 8.93311 | 9.1589 | 8.4801 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +2 | 4e-60 | 206 | 124/163 (76%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +2 | 9e-71 | 236 | 144/166 (87%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3006 bp)
>BART1_0-u21412.005 3006 150831_barley_pseudomolecules CCACCGCGACGCGGTTTCCCTCCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCGGC CCAACCCACCACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCCTA CCACCATTCCGACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACCGA CCGGTACTACGCGACTCTGCTCTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCCAT TTCCTCTCCTCCCCTCATAAGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCCTC CTCCGTCAACCGAAAAATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGCAA CACGGCCAACCGCAGCGCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCGCC CGTCGTTGGTCTCTCGCTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCTAG GTGGTGTAGCTGAGGAGGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAAGA GGAGTTCCGGAAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCCTC GCCGCCGCCAAGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGATATGGCGGGGATG GGGATGGGGATGGGGATGGAGGAGGTGGACATGGACATGGAGGACGACGGGGAGATGGAC ATGGAGATGGAGATGCAGCTGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACTGC TACGAGGACTACGACCTCGGCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACGAG CCACACCCCGCGGTCAGTCAATCGCCACCGTGCCCGACCCTCATAGTTTCATCTTTGATG TGATGCACACAGCTCGTCTCATGATCCTTCTCCGATTAGAGCTGTACAAAATGCTCTGGC TTGAGGGTTGACCCAGCGGATTAACTCAGGATGTTAGCTCCTTTTACCTATTTTGATTGA TTGATCGCAAGCTCGCTATGTTTTTACCCAAATCTCCTATGCTCTACTGATGAATGAGTG CTAACATGACCCAAGATGTAGGGTCACGTATTCATCTGTCCATTGTCAGTACGAAAGGTT GTATCTTGACACAGAAATCAAGAGGCTCACTCGCTTGCGTCAGATTGTAATTTAGCTAGC CTAAGGTTTCGGGTCAATTGCTAACTTCCATGGTCTGAAATTTCTTGTGTTCTCTACTTG AACTTGAAGGTCTACTCTTAGATACAGGGTCGATATCTGAACTTGAACTTGAAGGTCTAC TCTTAGATACTGGAACTTGAACTTGTCATTGTCAAGGCGACCCCCTTGGTATTTGCTTGT CATTGTAGTACTTGAGCTATGCTCAGTGGGCATACAAGTATTCCCAAATATCAGGAGTTA AGACACAAGAGTAGTAATCCACCTATGGCGTGCCTGGTAGCTACTTGTGCTAGGGGAAAA GGAATCTAGAAATGACATGTCTGAAGTCTGAACATTTGACAATTCATGACAGCACTTTCT ACCTGCTAGGATGCACAATGCGATTTATTTTGTCTGGAGAGATTAAAAATGAGATGATGG CTTCAGCTGCTATATTTGATCCATCGCGTTCAAGTGGGTGCAGTGCGTACTCAAGAAGCT ACCAAAGTATTGTACATATCACAAGGATACTGTTACCTGAAACTCACGTTCCAGAGATTA TCCATTTCCAAATAAATATCCCAGAGATTAACTGCAAACTTCCTGGCAGCTAAAATAACT ACTTATGTTAAATTTTGCATATTATCTTGTTTTTGTCGTACAGTCAGACTGTTCATACCA TACGTATTGTTTTTTTTAGTATCTTCTCCTAATTGTTTTTCCATTGTTATTTCAGCCTTG CCCCATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATCATATCACCATGCATCACGG TTACTTGTTCAAGAATGGCAGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACT TTCTTTACTGAGCCGAGATCTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCA TAGTCATAGGTCAAGGAACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCT TTCATCGTTTGGCCTGGGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGT TCCGGTTCTTGATGATACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAG GTATATATAATTATCCTGTATCGACTCGTCCCTCACAAGCGAGGAAAGGGAACAAAAGCG GAAACAAGCCACTAGCAGGGCGACCTTTGTGCAAGACCTGGTCCTCTCCACTTTATTTGG AGACGACTGAGTGCTCAAATGGCCCTACATTTTCCTTGTTAGATGGGTGCTTCCTTCACG CTGATTCAGATAGAACTGCAGCACTCTGCCTTGAGTTGGTCAATCTTAACTTGGGCGACA GGGAGAAGTGCGTCTGGTGGTGCACCGTTTCTTCGTGTCAGTCAAGTGCGGATTTTATTT GGGCTTGACACATACACCTTAATTTATGGTAGCTTGTCCCGTATTTCTCTTTGTCGCCGC ATTATCGGACAGCGGTTCCTTGCCTTGTACCATCCTTTTCATCGTCAAGGGACAATCGTC TGTACCAACATCACAGGGCTGTTACATACGCTACACAATGCAATGAGAAATATAGAAGTT CCACCTGTGTGGAAGAAATAAGCAGAACTCAGGTCCTTGTATGTCACACAAGTGTTGTGC TATGGACAAGGAATGTGTGGTGAGGATGGTGTTGCTCTTTGTGTGAACGTTAACTGCTGT GGATTTCCACACGCTGACAATGGTAACTGGCAATGGGAATTCCACGCTGAGTCGCTGAAT GACTTTGTTCGTGTGACTTTGAAACTTTGAATTCCATGCTGAATGACTTTGGAACTTTGA ATTCCA
Protein Sequence (112 aa)
>BART1_0-u21412.005 112 150831_barley_pseudomolecules MLNHITMHHGYLFKNGSRLRRFVIPERRALSLLSRDLRDAHLQALLGGGHSHRSRNTTTT TTNIYADPLLSSFGLGFATSDAEEPSKSSVPVLDDTSLLKEAPPQPWESRYI