Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G061690	83.6	+	+	3965	-781	Containing

Transcripts from Gene BART1_0-u21412

Transcript	Length(bp)	Description
BART1_0-u21412.001	2801	2801 bp MSTRG.21412.1 MSTRG.21412
BART1_0-u21412.002	2714	2714 bp MSTRG.21412.2 MSTRG.21412
BART1_0-u21412.003	2723	2723 bp MSTRG.21412.3 MSTRG.21412
BART1_0-u21412.004	2603	2603 bp MSTRG.21412.4 MSTRG.21412
BART1_0-u21412.005	3006	3006 bp MSTRG.21412.5 MSTRG.21412

Exon Structure of BART1_0-u21412

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g48190.1	+2	4e-60	206	124/163 (76%)	protein|drought induced 19 protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi2g46240.1.p	+2	9e-71	236	144/166 (87%)	pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons