- Transcript BART1_0-u21412.003
- Transcript IDBART1_0-u21412.003
- Gene IDBART1_0-u21412
Barley RTD
Exon Structure of BART1_0-u21412.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469768493 | 469768129 | + |
| chr3H | 2 | 469768956 | 469768572 | + |
| chr3H | 3 | 469769267 | 469769062 | + |
| chr3H | 4 | 469770408 | 469770331 | + |
| chr3H | 5 | 469770817 | 469770531 | + |
| chr3H | 6 | 469772874 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 8.49187 | 5.33501 | 0.22908 |
| morex | ETI | 16.2122 | 16.7927 | 16.2198 |
| morex | LEA | 3.66579 | 4.29332 | 3.32713 |
| morex | EPI | 17.1633 | 21.2907 | 12.1157 |
| morex | ROO | 20.7917 | 9.48135 | 3.59693 |
| morex | ROO2 | 69.8047 | 68.0096 | 73.5032 |
| morex | NOD | 13.4072 | 20.2381 | 19.721 |
| morex | RAC | 25.1968 | 30.0177 | 28.738 |
| morex | INF1 | 13.7605 | 0.0000246722 | 0.688611 |
| morex | INF2 | 0.0000000366558 | 0 | 0.0000000628249 |
| morex | CAR5 | 0.00503296 | 0.0424612 | 0.000000194069 |
| morex | CAR15 | 0.00000666284 | 1.35569 | 1.16469 |
| morex | LEM | 60.9803 | 57.46 | 54.9158 |
| morex | LOD | 69.7143 | 83.4782 | 53.5602 |
| morex | PAL | 66.1873 | 37.4317 | 32.8696 |
| morex | SEN | 10.5532 | 13.0652 | 11.3798 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +3 | 4e-97 | 305 | 186/251 (74%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +3 | 1e-118 | 362 | 220/254 (87%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2723 bp)
>BART1_0-u21412.003 2723 150831_barley_pseudomolecules CCCCGCGTCCCCATCCTCCCTCCCTTCGCCAGCCCCCGGCCGCGTTCACCAGAAAAAAAT ACTAAAAAACAAACCCTCCCCCGCGGCTCCACCCTCCGCAACCAACCACGCAACGCGACA CCTCTCCCTCCCCCTTCATCTCTTTTTACCCCGTGACGAACGAGCGAGCCCACCAGAACC CACCACCGCGACGCGGTTTCCCTCCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCG GCCCAACCCACCACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCC TACCACCATTCCGACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACC GACCGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCCTCCTCCGTCAACCGAAAA ATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGCAACACGGCCAACCGCAGC GCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCGCCCGTCGTTGGTCTCTCG CTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCTAGGTGGTGTAGCTGAGGA GGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAAGAGGAGTTCCGGAAGAGG AATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCCTCGCCGCCGCCAAGCGCT TCTACGCCGCGCAGCTCGGCCACATCGACGATATGGCGGGGATGGGGATGGGGATGGGGA TGGAGGAGGTGGACATGGACATGGAGGACGACGGGGAGATGGACATGGAGATGGAGATGC AGCTGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACTGCTACGAGGACTACGACC TCGGCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACGAGCCACACCCCGCGCCTT GCCCCATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATCATATCACCATGCATCACG GTTACTTGTTCAAGAATGGCAGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCAC TTTCTTTACTGAGCCGAGATCTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTC ATAGTCATAGGTCAAGGAACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGC TTTCATCGTTTGGCCTGGGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAG TTCCGGTTCTTGATGATACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAA GTATCGACTCGTCCCTCACAAGCGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTAGCA GGGCGACCTTTGTGCAAGACCTGGTCCTCTCCACTTTATTTGGAGACGACTGAGTGCTCA AATGGCCCTACATTTTCCTTGTTAGATGGGTGCTTCCTTCACGCTGATTCAGATAGAACT GCAGCACTCTGCCTTGAGTTGGTCAATCTTAACTTGGGCGACAGGGAGAAGTGCGTCTGG TGGTGCACCGTTTCTTCGTGTCAGTCAAGTGCGGATTTTATTTGGGCTTGACACATACAC CTTAATTTATGGTAGCTTGTCCCGTATTTCTCTTTGTCGCCGCATTATCGGACAGCGGTT CCTTGCCTTGTACCATCCTTTTCATCGTCAAGGGACAATCGTCTGTACCAACATCACAGG GCTGTTACATACGCTACACAATGCAATGAGAAATATAGAAGTTCCACCTGTGTGGAAGAA ATAAGCAGAACTCAGGTCCTTGTATGTCACACAAGTGTTGTGCTATGGACAAGGAATGTG TGGTGAGGATGGTGTTGCTCTTTGTGTGAACGTTAACTGCTGTGGATTTCCACACGCTGA CAATGGTAACTGGCAATGGGAATTCCACGCTGAGTCGCTGAATGACTTTGTTCGTGTGAC TTTGAAACTTTGAATTCCATGCTGAATGACTTTGGAACTTTGAATTCCACGTGACTTTGA AACTTTGAGTTCCACGCTGAATGACTTTGGAACTTTGAATTCCACGCTGGCTGAACATGT ACGTTTTTGGTTGCCTGTTTTCTTCGTCGACTAGAAATGGGTCGCTCTCTTTCGTGGTCT CCTGAAAACACCATGGGAAAGAGATGAGACGCTGAAATTCGCTTTGCCACCAGAGTCACA AAGTTAGCGATGTATTTTTTGACATGGAAAGTCCAACGTTTTTCATGGCAATATTTATAG GCACGAGGACCACAAATTTACTTTACAACCGCGGCAATTTTCTGATAAAAAAAATACGGA TTTACCATGCTCGCCAACTGAACTTGTCATTCTCGATGAACATAACTTTTCATGAAAAAG TTTGATTTGCCATGCTTAAAATCTGACGTTCATTGGATATTCGGGTCCCTCTTCTATGTG TCCATACATATGTTTGAATGTGTGCGTGGACACTCTGCTTATCTCTCGTTGGAGAGGTAG AGAACGGTGTTCTTCATTCTTTTTTTCATACTTGTCCATCTTTTTTTTATCAAACTCGAC TTTTGAATTTGACATTGAAATAATTCAAACATAAATATTAGGATCCAAACATAGTTTCTA AATTACTAGTCTAAATTTAATTTCAATTTATTAAGGCACACATGATCTGTTTTTTTCCCG TGGGTCGTCCACAAATGCTCAAC
Protein Sequence (252 aa)
>BART1_0-u21412.003 252 150831_barley_pseudomolecules MDSEHWISRLAAAKRFYAAQLGHIDDMAGMGMGMGMEEVDMDMEDDGEMDMEMEMQLEEA RWPEVACPYCYEDYDLGSLCVHLEEDHPYEPHPAPCPICSEKITRDMLNHITMHHGYLFK NGSRLRRFVIPERRALSLLSRDLRDAHLQALLGGGHSHRSRNTTTTTTNIYADPLLSSFG LGFATSDAEEPSKSSVPVLDDTSLLKEAPPQPWESSIDSSLTSEEREQKRKQATSRATFV QDLVLSTLFGDD