- Transcript BART1_0-u21412.002
- Transcript IDBART1_0-u21412.002
- Gene IDBART1_0-u21412
Barley RTD
Exon Structure of BART1_0-u21412.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469768956 | 469768129 | + |
| chr3H | 2 | 469769267 | 469769062 | + |
| chr3H | 3 | 469770408 | 469770331 | + |
| chr3H | 4 | 469770817 | 469770618 | + |
| chr3H | 5 | 469772874 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0.0000012332 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.0000000133333 | 0.000000322018 | 0.000000000386477 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.0000620273 | 4.52863 | 0.000777722 |
| morex | CAR5 | 0 | 0 | 3.31932 |
| morex | CAR15 | 0.00000538113 | 0 | 1.8144 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.000000140848 | 0 | 0.000013683 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +3 | 5e-85 | 273 | 164/251 (65%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.5.p | +3 | 6e-111 | 340 | 200/225 (89%) | pacid=32778881 transcript=Bradi2g46240.5 locus=Bradi2g46240 ID=Bradi2g46240.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2714 bp)
>BART1_0-u21412.002 2714 150831_barley_pseudomolecules CCCCGCGTCCCCATCCTCCCTCCCTTCGCCAGCCCCCGGCCGCGTTCACCAGAAAAAAAT ACTAAAAAACAAACCCTCCCCCGCGGCTCCACCCTCCGCAACCAACCACGCAACGCGACA CCTCTCCCTCCCCCTTCATCTCTTTTTACCCCGTGACGAACGAGCGAGCCCACCAGAACC CACCACCGCGACGCGGTTTCCCTCCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCG GCCCAACCCACCACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCC TACCACCATTCCGACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACC GACCGGTACTACGCGACTCTGCTCTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCC ATTTCCTCTCCTCCCCTCATAAGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCC TCCTCCGTCAACCGAAAAATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGC AACACGGCCAACCGCAGCGCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCG CCCGTCGTTGGTCTCTCGCTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCT AGGTGGTGTAGCTGAGGAGGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAA GAGGAGTTCCGGAAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCC TCGCCGCCGCCAAGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGATATGGCGGGGA TGGGGATGGGGATGGGGATGGAGGAGGTGGACATGGACATGGAGGACGACGGGGAGATGG ACATGGAGATGGAGATGCAGCTGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACT GCTACGAGGACTACGACCTCGGCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACG AGCCACACCCCGCGCCTTGCCCCATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATC ATATCACCATGCATCACGGTTACTTGTTCAAGGCGCTTCTAGGAGGCGGTCATAGTCATA GGTCAAGGAACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCTTTCATCGT TTGGCCTGGGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGTTCCGGTTC TTGATGATACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAGTATCGACT CGTCCCTCACAAGCGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTAGCAGGGCGACCT TTGTGCAAGACCTGGTCCTCTCCACTTTATTTGGAGACGACTGAGTGCTCAAATGGCCCT ACATTTTCCTTGTTAGATGGGTGCTTCCTTCACGCTGATTCAGATAGAACTGCAGCACTC TGCCTTGAGTTGGTCAATCTTAACTTGGGCGACAGGGAGAAGTGCGTCTGGTGGTGCACC GTTTCTTCGTGTCAGTCAAGTGCGGATTTTATTTGGGCTTGACACATACACCTTAATTTA TGGTAGCTTGTCCCGTATTTCTCTTTGTCGCCGCATTATCGGACAGCGGTTCCTTGCCTT GTACCATCCTTTTCATCGTCAAGGGACAATCGTCTGTACCAACATCACAGGGCTGTTACA TACGCTACACAATGCAATGAGAAATATAGAAGTTCCACCTGTGTGGAAGAAATAAGCAGA ACTCAGGTCCTTGTATGTCACACAAGTGTTGTGCTATGGACAAGGAATGTGTGGTGAGGA TGGTGTTGCTCTTTGTGTGAACGTTAACTGCTGTGGATTTCCACACGCTGACAATGGTAA CTGGCAATGGGAATTCCACGCTGAGTCGCTGAATGACTTTGTTCGTGTGACTTTGAAACT TTGAATTCCATGCTGAATGACTTTGGAACTTTGAATTCCACGTGACTTTGAAACTTTGAG TTCCACGCTGAATGACTTTGGAACTTTGAATTCCACGCTGGCTGAACATGTACGTTTTTG GTTGCCTGTTTTCTTCGTCGACTAGAAATGGGTCGCTCTCTTTCGTGGTCTCCTGAAAAC ACCATGGGAAAGAGATGAGACGCTGAAATTCGCTTTGCCACCAGAGTCACAAAGTTAGCG ATGTATTTTTTGACATGGAAAGTCCAACGTTTTTCATGGCAATATTTATAGGCACGAGGA CCACAAATTTACTTTACAACCGCGGCAATTTTCTGATAAAAAAAATACGGATTTACCATG CTCGCCAACTGAACTTGTCATTCTCGATGAACATAACTTTTCATGAAAAAGTTTGATTTG CCATGCTTAAAATCTGACGTTCATTGGATATTCGGGTCCCTCTTCTATGTGTCCATACAT ATGTTTGAATGTGTGCGTGGACACTCTGCTTATCTCTCGTTGGAGAGGTAGAGAACGGTG TTCTTCATTCTTTTTTTCATACTTGTCCATCTTTTTTTTATCAAACTCGACTTTTGAATT TGACATTGAAATAATTCAAACATAAATATTAGGATCCAAACATAGTTTCTAAATTACTAG TCTAAATTTAATTTCAATTTATTAAGGCACACATGATCTGTTTTTTTCCCGTGGGTCGTC CACAAATGCTCAAC
Protein Sequence (223 aa)
>BART1_0-u21412.002 223 150831_barley_pseudomolecules MDSEHWISRLAAAKRFYAAQLGHIDDMAGMGMGMGMEEVDMDMEDDGEMDMEMEMQLEEA RWPEVACPYCYEDYDLGSLCVHLEEDHPYEPHPAPCPICSEKITRDMLNHITMHHGYLFK ALLGGGHSHRSRNTTTTTTNIYADPLLSSFGLGFATSDAEEPSKSSVPVLDDTSLLKEAP PQPWESSIDSSLTSEEREQKRKQATSRATFVQDLVLSTLFGDD