- Transcript BART1_0-u21412.001
- Transcript IDBART1_0-u21412.001
- Gene IDBART1_0-u21412
Barley RTD
Exon Structure of BART1_0-u21412.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469768956 | 469768129 | + |
| chr3H | 2 | 469769267 | 469769062 | + |
| chr3H | 3 | 469770408 | 469770331 | + |
| chr3H | 4 | 469770817 | 469770531 | + |
| chr3H | 5 | 469772874 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 6.87104 | 4.77834 | 11.6539 |
| morex | ETI | 0.0000186454 | 0.000653039 | 0.972953 |
| morex | LEA | 3.56864 | 0.850158 | 7.98732 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 10.2382 | 0.843546 | 2.08304 |
| morex | ROO2 | 0.0132824 | 0.162114 | 0.000433599 |
| morex | NOD | 0 | 0.000012962 | 0.0000206251 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 4.82324 | 16.5275 | 13.0655 |
| morex | INF2 | 6.73128 | 5.49021 | 8.8532 |
| morex | CAR5 | 10.0591 | 8.36391 | 5.88805 |
| morex | CAR15 | 3.14195 | 0.00203816 | 1.15312 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.00000000579496 | 0.0000000355056 | 0 |
| morex | PAL | 0 | 0.000000000483212 | 0 |
| morex | SEN | 1.81617 | 0.000000000962449 | 4.72151 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +3 | 6e-97 | 305 | 186/251 (74%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +3 | 2e-118 | 362 | 220/254 (87%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2801 bp)
>BART1_0-u21412.001 2801 150831_barley_pseudomolecules CCCCGCGTCCCCATCCTCCCTCCCTTCGCCAGCCCCCGGCCGCGTTCACCAGAAAAAAAT ACTAAAAAACAAACCCTCCCCCGCGGCTCCACCCTCCGCAACCAACCACGCAACGCGACA CCTCTCCCTCCCCCTTCATCTCTTTTTACCCCGTGACGAACGAGCGAGCCCACCAGAACC CACCACCGCGACGCGGTTTCCCTCCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCG GCCCAACCCACCACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCC TACCACCATTCCGACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACC GACCGGTACTACGCGACTCTGCTCTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCC ATTTCCTCTCCTCCCCTCATAAGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCC TCCTCCGTCAACCGAAAAATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGC AACACGGCCAACCGCAGCGCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCG CCCGTCGTTGGTCTCTCGCTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCT AGGTGGTGTAGCTGAGGAGGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAA GAGGAGTTCCGGAAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCC TCGCCGCCGCCAAGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGATATGGCGGGGA TGGGGATGGGGATGGGGATGGAGGAGGTGGACATGGACATGGAGGACGACGGGGAGATGG ACATGGAGATGGAGATGCAGCTGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACT GCTACGAGGACTACGACCTCGGCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACG AGCCACACCCCGCGCCTTGCCCCATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATC ATATCACCATGCATCACGGTTACTTGTTCAAGAATGGCAGCCGGTTGCGCAGATTCGTTA TTCCCGAGCGCCGTGCACTTTCTTTACTGAGCCGAGATCTACGTGATGCTCATTTGCAGG CGCTTCTAGGAGGCGGTCATAGTCATAGGTCAAGGAACACCACCACCACCACTACAAATA TTTATGCTGATCCGCTGCTTTCATCGTTTGGCCTGGGCTTTGCAACATCAGATGCCGAGG AGCCATCAAAATCATCAGTTCCGGTTCTTGATGATACTTCACTTCTTAAGGAGGCGCCTC CTCAACCTTGGGAATCAAGTATCGACTCGTCCCTCACAAGCGAGGAAAGGGAACAAAAGC GGAAACAAGCCACTAGCAGGGCGACCTTTGTGCAAGACCTGGTCCTCTCCACTTTATTTG GAGACGACTGAGTGCTCAAATGGCCCTACATTTTCCTTGTTAGATGGGTGCTTCCTTCAC GCTGATTCAGATAGAACTGCAGCACTCTGCCTTGAGTTGGTCAATCTTAACTTGGGCGAC AGGGAGAAGTGCGTCTGGTGGTGCACCGTTTCTTCGTGTCAGTCAAGTGCGGATTTTATT TGGGCTTGACACATACACCTTAATTTATGGTAGCTTGTCCCGTATTTCTCTTTGTCGCCG CATTATCGGACAGCGGTTCCTTGCCTTGTACCATCCTTTTCATCGTCAAGGGACAATCGT CTGTACCAACATCACAGGGCTGTTACATACGCTACACAATGCAATGAGAAATATAGAAGT TCCACCTGTGTGGAAGAAATAAGCAGAACTCAGGTCCTTGTATGTCACACAAGTGTTGTG CTATGGACAAGGAATGTGTGGTGAGGATGGTGTTGCTCTTTGTGTGAACGTTAACTGCTG TGGATTTCCACACGCTGACAATGGTAACTGGCAATGGGAATTCCACGCTGAGTCGCTGAA TGACTTTGTTCGTGTGACTTTGAAACTTTGAATTCCATGCTGAATGACTTTGGAACTTTG AATTCCACGTGACTTTGAAACTTTGAGTTCCACGCTGAATGACTTTGGAACTTTGAATTC CACGCTGGCTGAACATGTACGTTTTTGGTTGCCTGTTTTCTTCGTCGACTAGAAATGGGT CGCTCTCTTTCGTGGTCTCCTGAAAACACCATGGGAAAGAGATGAGACGCTGAAATTCGC TTTGCCACCAGAGTCACAAAGTTAGCGATGTATTTTTTGACATGGAAAGTCCAACGTTTT TCATGGCAATATTTATAGGCACGAGGACCACAAATTTACTTTACAACCGCGGCAATTTTC TGATAAAAAAAATACGGATTTACCATGCTCGCCAACTGAACTTGTCATTCTCGATGAACA TAACTTTTCATGAAAAAGTTTGATTTGCCATGCTTAAAATCTGACGTTCATTGGATATTC GGGTCCCTCTTCTATGTGTCCATACATATGTTTGAATGTGTGCGTGGACACTCTGCTTAT CTCTCGTTGGAGAGGTAGAGAACGGTGTTCTTCATTCTTTTTTTCATACTTGTCCATCTT TTTTTTATCAAACTCGACTTTTGAATTTGACATTGAAATAATTCAAACATAAATATTAGG ATCCAAACATAGTTTCTAAATTACTAGTCTAAATTTAATTTCAATTTATTAAGGCACACA TGATCTGTTTTTTTCCCGTGGGTCGTCCACAAATGCTCAAC
Protein Sequence (252 aa)
>BART1_0-u21412.001 252 150831_barley_pseudomolecules MDSEHWISRLAAAKRFYAAQLGHIDDMAGMGMGMGMEEVDMDMEDDGEMDMEMEMQLEEA RWPEVACPYCYEDYDLGSLCVHLEEDHPYEPHPAPCPICSEKITRDMLNHITMHHGYLFK NGSRLRRFVIPERRALSLLSRDLRDAHLQALLGGGHSHRSRNTTTTTTNIYADPLLSSFG LGFATSDAEEPSKSSVPVLDDTSLLKEAPPQPWESSIDSSLTSEEREQKRKQATSRATFV QDLVLSTLFGDD