- Transcript BART1_0-u21397.001
- Transcript IDBART1_0-u21397.001
- Gene IDBART1_0-u21397
Barley RTD
Exon Structure of BART1_0-u21397.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 468069000 | 468068528 | - |
| chr3H | 2 | 468070481 | 468070200 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 19.0819 | 12.9094 | 17.1075 |
| morex | ETI | 11.8524 | 12.7973 | 15.45 |
| morex | LEA | 10.9313 | 6.53521 | 10.4134 |
| morex | EPI | 11.0568 | 13.0656 | 13.4014 |
| morex | ROO | 19.432 | 18.0043 | 5.85725 |
| morex | ROO2 | 11.1662 | 10.6887 | 11.1849 |
| morex | NOD | 28.3303 | 14.8749 | 9.89592 |
| morex | RAC | 21.0803 | 14.8352 | 18.5481 |
| morex | INF1 | 27.6742 | 24.8154 | 23.7037 |
| morex | INF2 | 28.5313 | 23.2699 | 30.5478 |
| morex | CAR5 | 25.7555 | 23.0166 | 22.7418 |
| morex | CAR15 | 9.47124 | 10.4149 | 10.6373 |
| morex | LEM | 11.2467 | 11.5286 | 8.95098 |
| morex | LOD | 18.0586 | 16.4374 | 14.5851 |
| morex | PAL | 5.94165 | 9.15702 | 8.65244 |
| morex | SEN | 8.60236 | 12.868 | 12.5831 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g21390.1 | +3 | 9e-34 | 119 | 59/66 (89%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g63470.3.p | +3 | 6e-32 | 113 | 55/58 (95%) | pacid=32798582 transcript=Bradi1g63470.3 locus=Bradi1g63470 ID=Bradi1g63470.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (755 bp)
>BART1_0-u21397.001 755 150831_barley_pseudomolecules GAACCGAGTTCCTAACTTCGAATCCTGTCTTCCTCCAATTTTTGTGAGGAATTAACCAGT TTCCTTTTGTTTCTTTTGCGGCTTCTGTGTTTCTTCCTGGGCCGGCCGGCCCACGAGGAG GGGCGCATAGGAGCTCCCGTTTCCGCGAGCCCGCACACGCGCGTGCAAAGTCTCGCATTT CCCCTGCTGCCCCCGACGCTCTCTTCCTCCTCTGGTGCGACACAGGTGGATCTCGCCGTC CCTGCTACGTCTTCGCCGCCGCATCTCGTCGCCGGTGCCAAGAGATGGGCTTGTGGATGC TGCTGGAGGGTTTTTTGCTTCTTGCAAATTCTTTGGCCATCCTGAATGAAGACCGCTTTC TTGGTCCCAGGGGCTGGAGCATGCCTGAAGTTTCAGGAAATGGGCAAACAAAGTCCTTGA AGGGGCAGATCGTGGGGCTCATCTACGCCACTCAGTTTTTGCGGATGCCCTTGATAGCGC TTAATATTCTTATCATTGTTGTGAAATTGGTGTCAGGCTGAGGATCTTTGTCGCGTCACT GCTGTTGGGTTGAACTGATTTCAGTTCCAGCATTATGTACAAGCTAATCATGTTCAGAAG TTGCTGGAAGGATGTTCATGCTGACATGAATGTGGCCTGTTGGTTTTGTTGCTGTAAATC CCTCTGACTCTGAGGGTATCTTTCCTCCTGTATGACTTCTGATTCAGTATGCACTATTGC ACTTACGATGTCTTGATCACCATGTAAATATTNNN
Protein Sequence ( aa)
>BART1_0-u21397.001 150831_barley_pseudomolecules