Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G061510	30.9	-	-	603	-1351	Containing

Transcripts from Gene BART1_0-u21397

Transcript	Length(bp)	Description
BART1_0-u21397.001	755	755 bp MSTRG.21397.1 MSTRG.21397
BART1_0-u21397.002	877	877 bp MSTRG.21397.2 MSTRG.21397

Exon Structure of BART1_0-u21397

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g21390.1	+2	2e-33	119	59/66 (89%)	protein|expressed protein
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g20650.1.p	+2	1e-30	110	55/58 (95%)	pacid=32797822 transcript=Bradi1g20650.1 locus=Bradi1g20650 ID=Bradi1g20650.1.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons