- Transcript BART1_0-u21354.015
- Transcript IDBART1_0-u21354.015
- Gene IDBART1_0-u21354
Exon Structure of BART1_0-u21354.015
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 460557509 | 460557015 | - |
chr3H | 2 | 460558032 | 460557695 | - |
chr3H | 3 | 460558373 | 460558101 | - |
chr3H | 4 | 460558898 | 460558793 | - |
chr3H | 5 | 460559814 | 460559714 | - |
chr3H | 6 | 460561746 | 460560479 | - |
chr3H | 7 | 460562685 | 460562502 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 1.00564 | 0.709517 | 0.809588 |
morex | ETI | 1.00807 | 1.2198 | 1.22173 |
morex | LEA | 1.12432 | 1.59298 | 1.99022 |
morex | EPI | 2.70791 | 3.87727 | 2.49459 |
morex | ROO | 0 | 0.963284 | 0.646558 |
morex | ROO2 | 2.88312 | 1.41175 | 3.67106 |
morex | NOD | 2.31224 | 0.988789 | 2.1001 |
morex | RAC | 1.96179 | 1.98432 | 2.3336 |
morex | INF1 | 0.000387059 | 0.473386 | 1.53211 |
morex | INF2 | 1.94321 | 0.836571 | 2.19754 |
morex | CAR5 | 0.507063 | 1.63806 | 2.6167 |
morex | CAR15 | 1.8279 | 1.43609 | 1.5455 |
morex | LEM | 3.5711 | 2.76788 | 2.50522 |
morex | LOD | 1.42703 | 3.99962 | 2.02345 |
morex | PAL | 3.52163 | 2.40744 | 2.39261 |
morex | SEN | 1.92173 | 2.31509 | 1.79919 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g47540.1 | +3 | 2e-144 | 437 | 261/439 (59%) | protein|NLI interacting factor-like phosphatase, putative, expressed |
TAIR PP10 | AT5G46410 @ ARAPORT AT5G46410.1 @ TAIR |
+3 | 2e-68 | 235 | 106/159 (67%) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453 |
BRACH PP3 | Bradi2g45880.1.p | +3 | 6e-141 | 427 | 216/258 (84%) | pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2765 bp)
>BART1_0-u21354.015 2765 150831_barley_pseudomolecules CATAATTCTCCTCTCCCCTCTTGTGATTCCGGTGCGTCTTCCCCTCCTCTCTGCCTGCCT GCGCGCACCGGTCTCCCCCCCCCCCCCTCCCTCTCTTCCTCCGTCCGCCTCCGCCTCCGG GAGAGGCCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTACCCGCGCCAGCATCGC CTCGATCCGTGTTGTACTCCTTGACCGACTATGGCTTTTATCAATTCAAAGTCAGATTCA TTCCAAGCCTTCCGTCTAAAACATAACTTAGGTATTGGATGCCCTTTGTTATTTTGCTAG AGCCTTTTTCCGTCGACCTAGCTCCAAAAGTAATTCTTTTGCTGTAGTATATGTTGGCAA CACAGATGATTTTGTCCTGAAATCTCTTATTCTCATGCATCCTTTTTTCTTACCTTTGAT GCTTCTCAACATTAGTAATTAATACTAGAACACAAGTACGTTACACTTCTAGGTTTATGT GTTTGCTTGTGCAAACTGTGTGAGACAGCAACTCAGAGGCAGGACTTTTGGGGTTCTGGT TATGTTATCAATCCTGTCCACAATTGGCACAAGCAATGTTGCACAATGCTGAAGGTTTTA TGGTGTGGGAAAAATTGCAATGTGCATTAGCCTTTTGGTATTCTCGTATTGTTTGTACTG AAGATTGTGACAAAAATTGGAAGCACAGGATGCTTTTTATGTTAAATCTGTTTGTTGCGC ACATATTGTTGGCATTGCTCTATTTGTATGTACTAGGAGGGTAAGTAAAGGAGAATTGGA GTGGTACACAATATTAGCTCACCAGAGGACACTGTGCCATGTCTGTGCTGCTTGGGTCAC TAACATGCTGTCAGATGAATACTATTGCTGCACATGCATTACTTGAATACTTCCAAGTAA CATCAGACCTACGCGCCATCTTAGTATAGTCACTGATGAGGTCTGTTTGCTTTAGGTGTG TATATGTCACAGAAGCTCGATGACTTCTTTTTTCTTACTTTATTCTGCAAAATACCATGG GTTTAGGTTTTTGTTTAATATCAGTACACATTATACACTTCGTAGTCCATGCTGAATAAG GAAGGCAGAAGTGTTCTTTCCCCTTTTTCCCAAGTAACCCGACAGGGTAGGTAAAAATGT TGGCACGGCATGTATTCATTAAACTATTATGGTTTTGTTTCCTTGTATATCTCTGAATGT TGGGCCTCAGTGTTTTCTTCCTTCTTTAAAGTCGTATTTTGTAACTTCTGTAATGGATGT GCAGACAGTTTTGGCAGTCTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGA AGTTTGATGATGACATTTTCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAA TCTCGCCTTCCCAAGTTGATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGG ACCCTCAGGATGAGCCTGAGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAG AATTTTCCGGTTTGCATGCTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAA TATCTGAAACTGTGGTTCCACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATG GCAAATCTCAGTCAAATGTAGTGAACACCGGTGATAAAGACATGAGTGGCATATGCGGAG TATTTCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAACCATGCCCATCAC AAGGGGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATTCTGAGGTTTTAG AGTGGTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTGGTTATACCGAGT TGAGCTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGGTCACTCTTGTGC TTGATTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATGATGCAGATTTTT CTTTTCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGAAGAGACCACATT TGCATATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATATTCACAGCCAGCC AAAGTGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACACATTGTTCTCGA AGCGTTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAAAAGATCTGACTG TTATTGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGCAGGTTTTCCAGT TGCAAGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCTTTGATGAGGGAT TATCTCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACGTCCGACCCATAA TTGCCAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAGCAGGTGTTAGGA AGAGTTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACATTGACCGAGCTA GTTGAGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGATCAAGAATTTTG GTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTATAGAATTTTGTA CATAAAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTTCTTCTTTGCCACATTGTC ATTGTCTATGTTCAGCTGTCTACTATTCAGTGTTTTTTCTGTTTCATGATGTCAACTACT CCCTC
Protein Sequence (388 aa)
>BART1_0-u21354.015 388 150831_barley_pseudomolecules MCRQFWQSELLIKMPALRMKRKFDDDIFGSEFDIKSMKSVKISPSQVDEFEQAFVLNSSY KDPQDEPEPITQLAVQDIRVTEFSGLHAVLGGTSVALLKDLISETVVPPNLEPDSLSNND DGKSQSNVVNTGDKDMSGICGVFPLNESTVEGCIGNEPCPSQGDMCFNNFGGECFSHSEV LEWFNPYMDESDVPNLIGYTELSSDAACVSKEQGARKVTLVLDLDETLVHSTLEHCDDAD FSFPVSFGLKEHVVYVRKRPHLHMFLQKMAEMFDVVIFTASQSVYADQLLDRLDPENTLF SKRFFRESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDE GLSQLIPFLETLAVADDVRPIIAKRFGN