Exon Structure of BART1_0-u21354.015

ChromosomeExonStartStopDirection
chr3H1460557509460557015-
chr3H2460558032460557695-
chr3H3460558373460558101-
chr3H4460558898460558793-
chr3H5460559814460559714-
chr3H6460561746460560479-
chr3H7460562685460562502-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB1.005640.7095170.809588
morexETI1.008071.21981.22173
morexLEA1.124321.592981.99022
morexEPI2.707913.877272.49459
morexROO00.9632840.646558
morexROO22.883121.411753.67106
morexNOD2.312240.9887892.1001
morexRAC1.961791.984322.3336
morexINF10.0003870590.4733861.53211
morexINF21.943210.8365712.19754
morexCAR50.5070631.638062.6167
morexCAR151.82791.436091.5455
morexLEM3.57112.767882.50522
morexLOD1.427033.999622.02345
morexPAL3.521632.407442.39261
morexSEN1.921732.315091.79919



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g47540.1 +3 2e-144 437 261/439 (59%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410 @ ARAPORT
AT5G46410.1 @ TAIR
+3 2e-68 235 106/159 (67%) Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3 Bradi2g45880.1.p +3 6e-141 427 216/258 (84%) pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2765 bp)

>BART1_0-u21354.015 2765 150831_barley_pseudomolecules
CATAATTCTCCTCTCCCCTCTTGTGATTCCGGTGCGTCTTCCCCTCCTCTCTGCCTGCCT
GCGCGCACCGGTCTCCCCCCCCCCCCCTCCCTCTCTTCCTCCGTCCGCCTCCGCCTCCGG
GAGAGGCCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTACCCGCGCCAGCATCGC
CTCGATCCGTGTTGTACTCCTTGACCGACTATGGCTTTTATCAATTCAAAGTCAGATTCA
TTCCAAGCCTTCCGTCTAAAACATAACTTAGGTATTGGATGCCCTTTGTTATTTTGCTAG
AGCCTTTTTCCGTCGACCTAGCTCCAAAAGTAATTCTTTTGCTGTAGTATATGTTGGCAA
CACAGATGATTTTGTCCTGAAATCTCTTATTCTCATGCATCCTTTTTTCTTACCTTTGAT
GCTTCTCAACATTAGTAATTAATACTAGAACACAAGTACGTTACACTTCTAGGTTTATGT
GTTTGCTTGTGCAAACTGTGTGAGACAGCAACTCAGAGGCAGGACTTTTGGGGTTCTGGT
TATGTTATCAATCCTGTCCACAATTGGCACAAGCAATGTTGCACAATGCTGAAGGTTTTA
TGGTGTGGGAAAAATTGCAATGTGCATTAGCCTTTTGGTATTCTCGTATTGTTTGTACTG
AAGATTGTGACAAAAATTGGAAGCACAGGATGCTTTTTATGTTAAATCTGTTTGTTGCGC
ACATATTGTTGGCATTGCTCTATTTGTATGTACTAGGAGGGTAAGTAAAGGAGAATTGGA
GTGGTACACAATATTAGCTCACCAGAGGACACTGTGCCATGTCTGTGCTGCTTGGGTCAC
TAACATGCTGTCAGATGAATACTATTGCTGCACATGCATTACTTGAATACTTCCAAGTAA
CATCAGACCTACGCGCCATCTTAGTATAGTCACTGATGAGGTCTGTTTGCTTTAGGTGTG
TATATGTCACAGAAGCTCGATGACTTCTTTTTTCTTACTTTATTCTGCAAAATACCATGG
GTTTAGGTTTTTGTTTAATATCAGTACACATTATACACTTCGTAGTCCATGCTGAATAAG
GAAGGCAGAAGTGTTCTTTCCCCTTTTTCCCAAGTAACCCGACAGGGTAGGTAAAAATGT
TGGCACGGCATGTATTCATTAAACTATTATGGTTTTGTTTCCTTGTATATCTCTGAATGT
TGGGCCTCAGTGTTTTCTTCCTTCTTTAAAGTCGTATTTTGTAACTTCTGTAATGGATGT
GCAGACAGTTTTGGCAGTCTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGA
AGTTTGATGATGACATTTTCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAA
TCTCGCCTTCCCAAGTTGATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGG
ACCCTCAGGATGAGCCTGAGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAG
AATTTTCCGGTTTGCATGCTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAA
TATCTGAAACTGTGGTTCCACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATG
GCAAATCTCAGTCAAATGTAGTGAACACCGGTGATAAAGACATGAGTGGCATATGCGGAG
TATTTCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAACCATGCCCATCAC
AAGGGGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATTCTGAGGTTTTAG
AGTGGTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTGGTTATACCGAGT
TGAGCTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGGTCACTCTTGTGC
TTGATTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATGATGCAGATTTTT
CTTTTCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGAAGAGACCACATT
TGCATATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATATTCACAGCCAGCC
AAAGTGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACACATTGTTCTCGA
AGCGTTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAAAAGATCTGACTG
TTATTGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGCAGGTTTTCCAGT
TGCAAGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCTTTGATGAGGGAT
TATCTCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACGTCCGACCCATAA
TTGCCAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAGCAGGTGTTAGGA
AGAGTTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACATTGACCGAGCTA
GTTGAGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGATCAAGAATTTTG
GTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTATAGAATTTTGTA
CATAAAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTTCTTCTTTGCCACATTGTC
ATTGTCTATGTTCAGCTGTCTACTATTCAGTGTTTTTTCTGTTTCATGATGTCAACTACT
CCCTC



Protein Sequence (388 aa)

>BART1_0-u21354.015 388 150831_barley_pseudomolecules
MCRQFWQSELLIKMPALRMKRKFDDDIFGSEFDIKSMKSVKISPSQVDEFEQAFVLNSSY
KDPQDEPEPITQLAVQDIRVTEFSGLHAVLGGTSVALLKDLISETVVPPNLEPDSLSNND
DGKSQSNVVNTGDKDMSGICGVFPLNESTVEGCIGNEPCPSQGDMCFNNFGGECFSHSEV
LEWFNPYMDESDVPNLIGYTELSSDAACVSKEQGARKVTLVLDLDETLVHSTLEHCDDAD
FSFPVSFGLKEHVVYVRKRPHLHMFLQKMAEMFDVVIFTASQSVYADQLLDRLDPENTLF
SKRFFRESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDE
GLSQLIPFLETLAVADDVRPIIAKRFGN