Exon Structure of BART1_0-u21354.005

ChromosomeExonStartStopDirection
chr3H1460557509460556333-
chr3H2460558032460557695-
chr3H3460558898460558101-
chr3H4460559814460559714-
chr3H5460560666460560479-
chr3H6460561746460560976-
chr3H7460562919460562502-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI00.3321850.178389
morexROO000
morexROO200.44820
morexNOD000
morexRAC000
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM000
morexLOD00.2802460
morexPAL000
morexSEN000



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g47540.1 +2 4e-149 457 239/324 (74%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410 @ ARAPORT
AT5G46410.1 @ TAIR
+2 9e-67 233 106/159 (67%) Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3 Bradi2g45880.1.p +2 3e-174 523 265/327 (81%) pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3791 bp)

>BART1_0-u21354.005 3791 150831_barley_pseudomolecules
CACCCCGAACCAGCATCGCCCTGGCCCCGCGCGTCATCCACCTGAAGAAAAAGCCTCGCG
GGTGGCGAGCCGCGGCGCGTACGAAGGCGATCGAGTCGGGGGGCTCGACACGGCCGGCCA
CAGCTGTCTCTGGCGGCATGACAAGTGGGCCCGGACCGCGCGCGCGGCCCACCGGCCAGC
GAGCCGGTCGAAGACGAGTGGAGACGGGCTATACCAAATCGGAGACCGAGCCCTCATAAT
TCTCCTCTCCCCTCTTGTGATTCCGGTGCGTCTTCCCCTCCTCTCTGCCTGCCTGCGCGC
ACCGGTCTCCCCCCCCCCCCCTCCCTCTCTTCCTCCGTCCGCCTCCGCCTCCGGGAGAGG
CCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTACCCGCGCCAGCATCGCCTCGAT
CCGTGTTGTACTCCTTGACCGACTATGGCTTTTATCAATTCAAAGTCAGATTCATTCCAA
GCCTTCCGTCTAAAACATAACTTAGGTATTGGATGCCCTTTGTTATTTTGCTAGAGCCTT
TTTCCGTCGACCTAGCTCCAAAAGTAATTCTTTTGCTGTAGTATATGTTGGCAACACAGA
TGATTTTGTCCTGAAATCTCTTATTCTCATGCATCCTTTTTTCTTACCTTTGATGCTTCT
CAACATTAGTAATTAATACTAGAACACAAGTACGTTACACTTCTAGGTTTATGTGTTTGC
TTGTGCAAACTGTGTGAGACAGCAACTCAGAGGCAGGACTTTTGGGGTTCTGGTTATGTT
ATCAATCCTGTCCACAATTGGCACAAGCAATGTTGCACAATGCTGAAGGTTTTATGGTGT
GGGAAAAATTGCAATGTGCATTAGCCTTTTGGTATTCTCGTATTGTTTGTACTGAAGATT
GTGACAAAAATTGGAAGCACAGGATGCTTTTTATGTTAAATCTGTTTGTTGCGCACATAT
TGTTGGCATTGCTCTATTTGTATGTACTAGGAGGGTAAGTAAAGGAGAATTGGAGTGGTA
CACAATATTAGCTCACCAGAGGACACTGTGCCATGTCTGTGCTGCTTGGGTCACTAACAT
GCTGTCAGATGAATACTATTGCTGCACATGCATTACTTGAATACTTCCAAGTAACATCAG
ACCTACGCGCCATCTTAGTATAGTCACTGATGAGGTCTGTTTGCTTTAGACAGTTTTGGC
AGTCTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGAAGTTTGATGATGACA
TTTTCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAATCTCGCCTTCCCAAG
TTGATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGGACCCTCAGGATGAGC
CTGAGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAGAATTTTCCGGTTTGC
ATGCTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAATATCTGAAACTGTGG
TTCCACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATGGCAAATCTCAGTCAA
ATGTAGTGAACACCGGTGATAAAGGTAAGGAGTACCCCTTACCCCTCGAGCAGTTTTTGT
AACTAATGTGGCTAGTTTAGGTGATAAGTTTTTGTTCACGGCCAATGTCTATTTGTCTGC
ACGTATAAAAATACACAGCCGCCAAATGCAATGTTTTAGAGAACACATTTGATATGCTCA
CAAGCAAGGTTTAACCTTTGCATGTGTATATTCACTTACAATTTGCATTGCAGAGTTTGC
AGATGAAGATGTAAATTCTGCAGCACAAGATATCTGTACTGTCAATGATCATGAGAAAAG
CCTGGGCTCAAACCCGGATTGCAGCCTGTTGGATATTTATAATCCTGATGATGCTTTTCC
TTTCTTATTTGATGTTCCAACTGGTCTCCTGGCTAGCTACAGTACATTTTGTGATGAATT
TGTACCCATCGATTCATTGACAGACATGAGTGGCATATGCGGAGTATTTCCACTTAATGA
GAGCACCGTGGAAGGTTGCATTGGCAATGAACCATGCCCATCACAAGGGGATATGTGCTT
TAATAACTTTGGTGGGGAGTGCTTTAGCCATTCTGAGGTTTTAGAGTGGTTTAATCCATA
TATGGATGAGTCTGATGTACCTAATCTTATTGGTTATACCGAGTTGAGCTCAGATGCTGC
TTGTGTATCTAAAGAGCAAGGGGCCAGGAAGGTCACTCTTGTGCTTGATTTGGATGAAAC
CCTTGTTCATTCAACTCTGGAGCACTGTGATGATGCAGATTTTTCTTTTCCAGTGTCCTT
TGGTCTGAAAGAACATGTGGTATATGTGAGGAAGAGACCACATTTGCATATGTTCCTCCA
GAAGATGGCTGAGATGTTTGACGTTGTTATATTCACAGCCAGCCAAAGTGTTTATGCAGA
CCAGCTGCTTGACAGGCTTGATCCAGAGAACACATTGTTCTCGAAGCGTTTTTTCCGCGA
GTCATGTGTATTTACGGAAAGTGGCTACACAAAAGATCTGACTGTTATTGGAGTTGACCT
TGCAAAGGTTGCCATAATTGACAACACTCCGCAGGTTTTCCAGTTGCAAGTGAATAATGG
TATACCCATAGAGAGCTGGTATAATGACCCCTTTGATGAGGGATTATCTCAGCTGATTCC
ATTCCTGGAGACACTTGCTGTTGCTGATGACGTCCGACCCATAATTGCCAAGAGGTTTGG
CAACTAAAAGGATAATGGCTGAGGTTTTCCAGCAGGTGTTAGGAAGAGTTTGTTGGTTAC
TCACATAGAGGGACAAGAACTTACATGACACATTGACCGAGCTAGTTGAGACTTGCCTTT
TTCTTAATTTTATTTACATGGGTTTCATAGGATCAAGAATTTTGGTGGCAGAGCTATTTC
TCGTGAATTGTAAATATCCTCAAACACTGTTATAGAATTTTGTACATAAAAACTGTTAGA
AATGAAAGCGAAACTCTCTAAAATTTCTTCTTTGCCACATTGTCATTGTCTATGTTCAGC
TGTCTACTATTCAGTGTTTTTTCTGTTTCATGATGTCAACTACTCCCTCTGTCCTACAAT
GTAAAACGTTTTTGCAAGCTAACATATTTGCAAGTTACATTGTGGAACGGAGGGAGCAGA
ATTGATTTTGTAACACAACTGTCTGATATCTTCTGCTAAGATAAATTATCATGTTTGACT
CTTGTCTATTCATACGTAAATTAGATACCTGGCACGTGGAGATTGTTCTGAATACTTATC
TTTGTCTGATGTGGGGATCTAGGCTATCCAGCTACTACAAAGGTGAAATTTCATGTAAAA
GTCACGCCTGTCTGCCATATTGTTCGCCGCAGTTCCTCCAACACGCAGCAATGCAATTGT
TAAAATGAGGCAAGAGTCTAGAGGTATTTTGTGCAATGTTGTGAACTCGATCTTCTGGCT
CAACATCATCTACAACCAAACATTTCTGACATTCCGATGCTTTTTTCAACTTCTGGTGGA
AGGTCTTAGTTGCCACTTGAAGCCATTCTGAACTTGACTCAGAGCCAGGAGCACCAACCA
TTATCTAGCGCCTGTGTCTAACAAAACAAGACCATTATTACTCCGATACATATTACTTGG
CCGATACATATTACTTGTAGCTTAAATGGATGTATTTAGCACTGAAGTACGTCTAGATAC
ACATGTTTTATCAATAAGTAATATGGCTCGTACGTCTAGATACACACGTTTCATCAATAA
GTAACATGGCT



Protein Sequence (253 aa)

>BART1_0-u21354.005 253 150831_barley_pseudomolecules
MSGICGVFPLNESTVEGCIGNEPCPSQGDMCFNNFGGECFSHSEVLEWFNPYMDESDVPN
LIGYTELSSDAACVSKEQGARKVTLVLDLDETLVHSTLEHCDDADFSFPVSFGLKEHVVY
VRKRPHLHMFLQKMAEMFDVVIFTASQSVYADQLLDRLDPENTLFSKRFFRESCVFTESG
YTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGLSQLIPFLETLAVA
DDVRPIIAKRFGN