Exon Structure of BART1_0-u21354.004

ChromosomeExonStartStopDirection
chr3H1460557509460556333-
chr3H2460558032460557695-
chr3H3460558583460558101-
chr3H4460558898460558793-
chr3H5460559814460559714-
chr3H6460560666460560479-
chr3H7460561746460561660-
chr3H8460562957460562502-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI00.00000005898410
morexROO000
morexROO2000
morexNOD000
morexRAC000
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM000
morexLOD000
morexPAL000
morexSEN000



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g47540.1 +2 0.0 578 312/448 (70%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410 @ ARAPORT
AT5G46410.1 @ TAIR
+2 1e-67 234 106/159 (67%) Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3 Bradi2g45880.1.p +2 0.0 657 340/449 (76%) pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2936 bp)

>BART1_0-u21354.004 2936 150831_barley_pseudomolecules
CCCACCCGCACATCTCACCGCAGCCCCTCCGTCACTGACACCCCGAACCAGCATCGCCCT
GGCCCCGCGCGTCATCCACCTGAAGAAAAAGCCTCGCGGGTGGCGAGCCGCGGCGCGTAC
GAAGGCGATCGAGTCGGGGGGCTCGACACGGCCGGCCACAGCTGTCTCTGGCGGCATGAC
AAGTGGGCCCGGACCGCGCGCGCGGCCCACCGGCCAGCGAGCCGGTCGAAGACGAGTGGA
GACGGGCTATACCAAATCGGAGACCGAGCCCTCATAATTCTCCTCTCCCCTCTTGTGATT
CCGGTGCGTCTTCCCCTCCTCTCTGCCTGCCTGCGCGCACCGGTCTCCCCCCCCCCCCCT
CCCTCTCTTCCTCCGTCCGCCTCCGCCTCCGGGAGAGGCCGAGAGAGAGGGAGAGAGGGA
GGACGCGCCGGAGCTACCCGCGCCAGCATCGCCTCGATCCGTGTTGTACTCCTTGACCGA
CTATGGCTTTTATCAATTCAAAGTCAGATTCATTCCAAGCCTTCCGTCTAAAACATAACT
TAGACAGTTTTGGCAGTCTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGAA
GTTTGATGATGACATTTTCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAAT
CTCGCCTTCCCAAGTTGATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGGA
CCCTCAGGATGAGCCTGAGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAGA
ATTTTCCGGTTTGCATGCTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAAT
ATCTGAAACTGTGGTTCCACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATGG
CAAATCTCAGTCAAATGTAGTGAACACCGGTGATAAAGAGTTTGCAGATGAAGATGTAAA
TTCTGCAGCACAAGATATCTGTACTGTCAATGATCATGAGAAAAGCCTGGGCTCAAACCC
GGATTGCAGCCTGTTGGATATTTATAATCCTGATGATGCTTTTCCTTTCTTATTTGATGT
TCCAACTGGTCTCCTGGCTAGCTACAGTACATTTTGTGATGAATTTGTACCCATCGATTC
ATTGACAGACATGAGTGGCATATGCGGAGTATTTCCACTTAATGAGAGCACCGTGGAAGG
TTGCATTGGCAATGAACCATGCCCATCACAAGGGGATATGTGCTTTAATAACTTTGGTGG
GGAGTGCTTTAGCCATTCTGAGGTTTTAGAGTGGTTTAATCCATATATGGATGAGTCTGA
TGTACCTAATCTTATTGGTTATACCGAGTTGAGCTCAGATGCTGCTTGTGTATCTAAAGA
GCAAGGGGCCAGGAAGGTCACTCTTGTGCTTGATTTGGATGAAACCCTTGTTCATTCAAC
TCTGGAGCACTGTGATGATGCAGATTTTTCTTTTCCAGTGTCCTTTGGTCTGAAAGAACA
TGTGGTATATGTGAGGAAGAGACCACATTTGCATATGTTCCTCCAGAAGATGGCTGAGAT
GTTTGACGTTGTTATATTCACAGCCAGCCAAAGTGTTTATGCAGACCAGCTGCTTGACAG
GCTTGATCCAGAGAACACATTGTTCTCGAAGCGTTTTTTCCGCGAGTCATGTGTATTTAC
GGAAAGTGGCTACACAAAAGATCTGACTGTTATTGGAGTTGACCTTGCAAAGGTTGCCAT
AATTGACAACACTCCGCAGGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAG
CTGGTATAATGACCCCTTTGATGAGGGATTATCTCAGCTGATTCCATTCCTGGAGACACT
TGCTGTTGCTGATGACGTCCGACCCATAATTGCCAAGAGGTTTGGCAACTAAAAGGATAA
TGGCTGAGGTTTTCCAGCAGGTGTTAGGAAGAGTTTGTTGGTTACTCACATAGAGGGACA
AGAACTTACATGACACATTGACCGAGCTAGTTGAGACTTGCCTTTTTCTTAATTTTATTT
ACATGGGTTTCATAGGATCAAGAATTTTGGTGGCAGAGCTATTTCTCGTGAATTGTAAAT
ATCCTCAAACACTGTTATAGAATTTTGTACATAAAAACTGTTAGAAATGAAAGCGAAACT
CTCTAAAATTTCTTCTTTGCCACATTGTCATTGTCTATGTTCAGCTGTCTACTATTCAGT
GTTTTTTCTGTTTCATGATGTCAACTACTCCCTCTGTCCTACAATGTAAAACGTTTTTGC
AAGCTAACATATTTGCAAGTTACATTGTGGAACGGAGGGAGCAGAATTGATTTTGTAACA
CAACTGTCTGATATCTTCTGCTAAGATAAATTATCATGTTTGACTCTTGTCTATTCATAC
GTAAATTAGATACCTGGCACGTGGAGATTGTTCTGAATACTTATCTTTGTCTGATGTGGG
GATCTAGGCTATCCAGCTACTACAAAGGTGAAATTTCATGTAAAAGTCACGCCTGTCTGC
CATATTGTTCGCCGCAGTTCCTCCAACACGCAGCAATGCAATTGTTAAAATGAGGCAAGA
GTCTAGAGGTATTTTGTGCAATGTTGTGAACTCGATCTTCTGGCTCAACATCATCTACAA
CCAAACATTTCTGACATTCCGATGCTTTTTTCAACTTCTGGTGGAAGGTCTTAGTTGCCA
CTTGAAGCCATTCTGAACTTGACTCAGAGCCAGGAGCACCAACCATTATCTAGCGCCTGT
GTCTAACAAAACAAGACCATTATTACTCCGATACATATTACTTGGCCGATACATATTACT
TGTAGCTTAAATGGATGTATTTAGCACTGAAGTACGTCTAGATACACATGTTTTATCAAT
AAGTAATATGGCTCGTACGTCTAGATACACACGTTTCATCAATAAGTAACATGGCT



Protein Sequence (445 aa)

>BART1_0-u21354.004 445 150831_barley_pseudomolecules
MPALRMKRKFDDDIFGSEFDIKSMKSVKISPSQVDEFEQAFVLNSSYKDPQDEPEPITQL
AVQDIRVTEFSGLHAVLGGTSVALLKDLISETVVPPNLEPDSLSNNDDGKSQSNVVNTGD
KEFADEDVNSAAQDICTVNDHEKSLGSNPDCSLLDIYNPDDAFPFLFDVPTGLLASYSTF
CDEFVPIDSLTDMSGICGVFPLNESTVEGCIGNEPCPSQGDMCFNNFGGECFSHSEVLEW
FNPYMDESDVPNLIGYTELSSDAACVSKEQGARKVTLVLDLDETLVHSTLEHCDDADFSF
PVSFGLKEHVVYVRKRPHLHMFLQKMAEMFDVVIFTASQSVYADQLLDRLDPENTLFSKR
FFRESCVFTESGYTKDLTVIGVDLAKVAIIDNTPQVFQLQVNNGIPIESWYNDPFDEGLS
QLIPFLETLAVADDVRPIIAKRFGN