- Transcript BART1_0-u20988.006
- Transcript IDBART1_0-u20988.006
- Gene IDBART1_0-u20988
Barley RTD
Exon Structure of BART1_0-u20988.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 413470146 | 413469228 | - |
| chr3H | 2 | 413470312 | 413470222 | - |
| chr3H | 3 | 413471866 | 413470388 | - |
| chr3H | 4 | 413474603 | 413472688 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.000000535469 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.0000270317 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.24224 | 0.988397 | 0.377374 |
| morex | LEM | 0 | 0.000018428 | 0 |
| morex | LOD | 0.000175546 | 0.0000356169 | 0.00120747 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +2 | 0.0 | 707 | 444/646 (69%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+2 | 9e-123 | 398 | 260/545 (48%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +2 | 0.0 | 857 | 495/635 (78%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4405 bp)
>BART1_0-u20988.006 4405 150831_barley_pseudomolecules CTGCGCGCCTGCGTCCTCGGTTTTTCTCCGCTGAGCTTTCCTTCAACCCCGCTCAGCTCC CTCCCTTCCTACAAATCTGGTCTGGTGGGCGCTGTTCGCCGCGGCGGGTCTCTCGCGCCC GCGCTCCCGCAACAACCTCAAAACCCTAGCCATCCTCGCGACCCAGTCGATTGGATCGAC CGCTTCCTCCTCCTCCGCCCAGACCCAGACCCAGGTGCGTCGGCTGCCGGATTCTCCTCG CCCTCCCTGCCTGCTTCCATGTCTATATGTATGATTGTGTATACGTCGTTTGCCTTCGCT GTTGTTTGCTGGAATCCTGTCTGTTATCGTCTCTGATGCGCGCCGGGATTTCCTGCCCGC TTTCCGCCCGTCGTTTTGCGCCGATTCGTGCCAGATTCACGACTCTCTGAAACCTGTTTT TTCCTTCTTCTAAAATATATCTCCCTCTGATTGTGTGCGTGTTTCTTCTTTCATGGTTCT TGTGATTGTGTGATGAGCAGAGAAAGTCATGGCAGGCATGTTGGTTTCCCTCCGAGATAA GAAATTTTTGGCGGCTTTCATTGATGCGCTCTTTCCTTTCCTTTAGCATGCAGCCTTTTG CGCCCCCTTTTTTGTTGCTTTCTGTTCAGGGTGAGCAATCCGGCGATACAAAGGGCCGCC GCTGGAATTTGTTTCTTTACTCCTTTTTCTCATACCAGGTCGTTATGGATTATGGCTCCC GATTTCTGTTTTCTCATGGGCCATTCCTCGAGACATCTGGGCGTGCTTGCCTCAGATTTG TCCTCTCTGTTTCGGTTGCCCTTGTTTATTCGATGACGGACATGGGAGATCGTTTCAGTG GATCTTTTTATCACCTGTCACTATTCCTACTTCGTTAAATTATGGACGGGTTGATGTACA AAACTTTAAATTCTTGCGGATGCTACAGGAATTATTAGAATTATATAATAAACGTGTTAT CACTTAGCAAAGTGATCGTTTGCTCTGTTTTTTTGGGTATGCTATCCCTTCAGGGGCATT ATACATTTCCATTTCTCAACTTAAAAAAAATAACATTTCTCAAGCGAAGTATAAAAGGGT GAAACTCACTAGCCTTTTTCCTCGCGAACTTCAGTGCGAACCTGTAGTAATATTGTCCAA TTGCACGGTTTGGGTTGCCTCGAGGTTTTGGGAATTAAGACTCGGCCAGCTGTCTCCCGA ATTATTACCTATTGATGTCAATGTTTGATCTGAAAAGCAAATCATAGCTTATGGGATCGT CCTATCTTTATTGATTGGAGGCTCCTCCTTAAGCCCTGCCACAAATCATATTGATTGGAT GCTCTTTATTGAGTAAGTGCCATACTGTGGCAAAGTTTGGTTATGCAAAAATGTGATGCA ATATTGATTGGGGCGTCGTCTAGTTTTAGGTTGTCCCAACTTGTAAGGGCATGCACAATA ATCTGATGCGTGCGCTAAGCATATGAAGAATTGAAGACCTTACTAGAGCTCTTTTGGTTG TGAGTGAAGACTACCTTTTCCCTTCTTTTCGAGAGTCTGATCATACAATCATCTCCTGGC AAGTAATGCATACTGAACTTAAAAAGTAGAAGGGATGTGCTAGTAGTAAGTGAATAGGAT CTCCATGAAGTTGGTGTTATTCTGATAACCATGTGGTTGGTACTTCCCATAATGTGTTTT CAAAAGGAACATGACTTATAATTTAGCCATAATATGTGGGCTACTTTATCAGCAACTTTA ACATTTTCCTTCTGATGTGCACTGAAAATAGATAAGTGACACATGTATTTAGCATGATCT ACAATCTCTTATCCACCACAGAAATTTTAACAAGACTGTTATTTTTGCAGGGACCGCTGA TTTCACTCCTGTGTGTTTTCAACTCACTTGGGATCCGCGAGAGTGCTGCTATACTGCAGG ATCATCGCTTTCTGTTTGGCCTGAGCTGTGGAAGTTTCTAAGTAGAAACTGAGGGTCAGT TCAAAACTTTATCCCACTCACCCCATACATACTGGCGAGAAATGGATCGTGATGATGTAT CTGGCTTTGTTAGCGGGGGTTGCAAGCTGTTCTGAGTTTTCTAACCTAGTAGAAGTTAAT AAATAAAGTTATGATACCAGGAAGTCAGTCAACTGGCGGTTCTTTTCATTTACTAATTGG TTGATGTTTCCGAATTGGAATGGACAAAACTTCTCATGGCCTTGGATTTGGTGATAGCAT CAACTCGTTAAACACTTCTCATTACCGGAGTTCAGTCCAACACACTGCTCAGCATAGAGA CACTACACTTGATTCCACATCATATTCCAGCTTCTCATCCACCAACACAAAAGCCCTGAA AAGGAAGTGGGGTACTATGGCTGGAGCAGAAGGTACTGGGGATGCATTACTCACTCTGGG TTTAGGCCGTTCACCAAGTTCATCTGACAATAGCAAAGTAAGCTCTGCCACAGCCTGTGC AATGTCTCCATGCTCGCTAAAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAA TTTTGAGCTTTCCCTTGGCAATGATGTTGCACGTTTTCAAAGGAAATCCTCTGCTGGTTT AGTAGCCAATTCTCCTAAACTGGATCTTCAGTTGAGTTTATCCACTGGCTCACCTGAATC TGCTGTCACTTGTACAAATATGGTGTCACCAAATATTCATGATGGCTTGGACATACCAGT GACCTATTCATTACCAGCCATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGA GCACTCTGTGGTTTCATCATCATATGCGTCTGAAGCAACATATGCATTTCCATTTTCGAA GATACCCAGACAAGAGAATGGTACTTTGTCTTCACCAGTCATATCGTCAACTATGCCAGC AAGTGTGAAGAGCTCAGTTGCCTGTACTTCGGTGGTAACTAACCCTCAGCAGCGCAATCT TAACACTAAAACCTGCCAGTTCCCTGGATGTGGCAAAGGGGCAAGAGGTGCATCAGGGCA TTGTATAGCCCATGGTGGTGGTAGGCGATGCCAGAAAGCTGGTTGCCAGAAGGGTGCTGA AGGAAGGACCATATATTGCAAGGCCCATGGTGGAGGGAGGAGATGTGAGTTTCTTGGATG TACAAAGAGCGCTGAAGGACGCACCGACCACTGCATTGCCCATGGTGGTGGCCGCCGGTG CAGTAATGATGGCTGCTCCCGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGG TGGTGGAAAAAGGTGTCAGCAGGAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCT CTGCATCTCTCATGGGGGTGGGAGGCGCTGCCAGTTTCCAGAATGTGCAAAGGGTGCACA GGGAAGCACAAAGTTCTGCAAGGCACATGGTGGAGGCAAGCGCTGCTTATTTGAGGGTGG TGGAGTGTGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGG CAAGAGATGCAGGTTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACTGATTTCTGCAA GGCGCATGGGGGAGGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGCTTCGGTATTGG CACTGAGCAGTGTGATAAGTTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGC TCTAGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTAATCCACCACTT CGCCGCAGATGTTAAACCCGGCGAGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGT TTCGATGCAGTCGGGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCATGGTGGTGGGCT GCTGGCGCTGCTTTCTCGCGGCGGCAACCACACAGGCCCTGTTGGTAACTCCGATAACGG CGCTTCTGTCATGATGGCGTGGATGTGAGCGGGCGGGCATTCTCATCAAGAATTGGTTGC TTCAAGTTTTGATCTGTTTCCAGAGCTAATGCTGTGGCGGGATAAAGTTCCACATTTCAC CAATTGTTGTCCTAGTCGTTTGGAACTGGTAGGACATATATCCTCCGTGTAGAATAAATA AGGGAGAGCGTTGTGGGCTTCTCTGTTATTGTAATGTAATTAATTAATTAATGTCGTCAA ACTGCCCTTGCTTTGTGTTTATTACAATTTGTGTAATCTGATACTACTTCACAGTTCCTA CTTGGATACAATGTCTTCGCAGTTTGCTTTGCTTTGTGTTTCTGGTAACACTGTAGTATG TGCTTTGTGTTTCTGGTAAAGTGGTAATACTGTAGTCTGTAGTACAACTTTTTTGGCGGG TGAGGGTTATCTGGTCATGTCATCAGATAATTCTCTTCCGCCATCAACATCAAGAGATGA ATGTTGATGTCCATATCATTGCTAG
Protein Sequence (582 aa)
>BART1_0-u20988.006 582 150831_barley_pseudomolecules MDKTSHGLGFGDSINSLNTSHYRSSVQHTAQHRDTTLDSTSYSSFSSTNTKALKRKWGTM AGAEGTGDALLTLGLGRSPSSSDNSKVSSATACAMSPCSLKEADEESSVDLSLNFELSLG NDVARFQRKSSAGLVANSPKLDLQLSLSTGSPESAVTCTNMVSPNIHDGLDIPVTYSLPA IIGNGSAPSSWGFEHSVVSSSYASEATYAFPFSKIPRQENGTLSSPVISSTMPASVKSSV ACTSVVTNPQQRNLNTKTCQFPGCGKGARGASGHCIAHGGGRRCQKAGCQKGAEGRTIYC KAHGGGRRCEFLGCTKSAEGRTDHCIAHGGGRRCSNDGCSRAARGRSGLCIRHGGGKRCQ QEKCTKSAEGHSGLCISHGGGRRCQFPECAKGAQGSTKFCKAHGGGKRCLFEGGGVCPKS VHGGTQYCVAHGGGKRCRFDGCVKSAQGSTDFCKAHGGGKRCSWGLPGSSFGIGTEQCDK FARSKTGLCSAHTALVQDHCVHGGGTLGPVIHHFAADVKPGEMEVAAAVKVDPVSMQSGS PLPEPEGRVHGGGLLALLSRGGNHTGPVGNSDNGASVMMAWM