- Gene BART1_0-u20988
- Gene IDBART1_0-u20988
- Location chr3H: 413469036 - 413474829
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU3Hr1G055650 | 92.6 | - | - | 5366 | -428 | Containing |
Transcripts from Gene BART1_0-u20988
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u20988.001 | 3334 | 3334 bp MSTRG.20988.1 MSTRG.20988 |
| BART1_0-u20988.002 | 3337 | 3337 bp MSTRG.20988.2 MSTRG.20988 |
| BART1_0-u20988.003 | 3147 | 3147 bp MSTRG.20988.3 MSTRG.20988 |
| BART1_0-u20988.004 | 2970 | 2970 bp MSTRG.20988.4 MSTRG.20988 |
| BART1_0-u20988.005 | 4481 | 4481 bp MSTRG.20988.5 MSTRG.20988 |
| BART1_0-u20988.006 | 4405 | 4405 bp MSTRG.20988.6 MSTRG.20988 |
| BART1_0-u20988.007 | 2892 | 2892 bp MSTRG.20988.7 MSTRG.20988 |
| BART1_0-u20988.008 | 2677 | 2677 bp MSTRG.20988.8 MSTRG.20988 |
| BART1_0-u20988.009 | 2441 | 2441 bp MSTRG.20988.9 MSTRG.20988 |
| BART1_0-u20988.010 | 2580 | 2580 bp MSTRG.20988.10 MSTRG.20988 |
Exon Structure of BART1_0-u20988
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +1 | 0.0 | 768 | 468/646 (72%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+1 | 7e-144 | 455 | 280/545 (51%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +1 | 0.0 | 920 | 519/635 (82%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons