- Transcript BART1_0-u20988.005
- Transcript IDBART1_0-u20988.005
- Gene IDBART1_0-u20988
Barley RTD
Exon Structure of BART1_0-u20988.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 413470312 | 413469199 | - |
| chr3H | 2 | 413471866 | 413470388 | - |
| chr3H | 3 | 413474575 | 413472688 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.2019 | 2.63384 | 1.2548 |
| morex | ETI | 0.245701 | 0.455425 | 0.447443 |
| morex | LEA | 0.657943 | 0.848032 | 1.0883 |
| morex | EPI | 0.42841 | 1.48994 | 0.256669 |
| morex | ROO | 0.605862 | 1.60773 | 0.724877 |
| morex | ROO2 | 0.872707 | 1.04026 | 0.953825 |
| morex | NOD | 0.445613 | 0.434571 | 0.437442 |
| morex | RAC | 3.0727 | 2.42031 | 2.6368 |
| morex | INF1 | 1.11231 | 1.02997 | 1.21714 |
| morex | INF2 | 1.45222 | 0.604015 | 1.00248 |
| morex | CAR5 | 7.09247 | 7.12291 | 6.53323 |
| morex | CAR15 | 1.67137 | 0.907179 | 0.874632 |
| morex | LEM | 1.31665 | 1.73061 | 0.925788 |
| morex | LOD | 1.52759 | 0.74794 | 2.05313 |
| morex | PAL | 0.550203 | 0.427112 | 0.615778 |
| morex | SEN | 0.498247 | 0.805759 | 0.744245 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +1 | 0.0 | 768 | 468/646 (72%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+1 | 7e-144 | 455 | 280/545 (51%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +1 | 0.0 | 920 | 519/635 (82%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4481 bp)
>BART1_0-u20988.005 4481 150831_barley_pseudomolecules CGCTGAGCTTTCCTTCAACCCCGCTCAGCTCCCTCCCTTCCTACAAATCTGGTCTGGTGG GCGCTGTTCGCCGCGGCGGGTCTCTCGCGCCCGCGCTCCCGCAACAACCTCAAAACCCTA GCCATCCTCGCGACCCAGTCGATTGGATCGACCGCTTCCTCCTCCTCCGCCCAGACCCAG ACCCAGGTGCGTCGGCTGCCGGATTCTCCTCGCCCTCCCTGCCTGCTTCCATGTCTATAT GTATGATTGTGTATACGTCGTTTGCCTTCGCTGTTGTTTGCTGGAATCCTGTCTGTTATC GTCTCTGATGCGCGCCGGGATTTCCTGCCCGCTTTCCGCCCGTCGTTTTGCGCCGATTCG TGCCAGATTCACGACTCTCTGAAACCTGTTTTTTCCTTCTTCTAAAATATATCTCCCTCT GATTGTGTGCGTGTTTCTTCTTTCATGGTTCTTGTGATTGTGTGATGAGCAGAGAAAGTC ATGGCAGGCATGTTGGTTTCCCTCCGAGATAAGAAATTTTTGGCGGCTTTCATTGATGCG CTCTTTCCTTTCCTTTAGCATGCAGCCTTTTGCGCCCCCTTTTTTGTTGCTTTCTGTTCA GGGTGAGCAATCCGGCGATACAAAGGGCCGCCGCTGGAATTTGTTTCTTTACTCCTTTTT CTCATACCAGGTCGTTATGGATTATGGCTCCCGATTTCTGTTTTCTCATGGGCCATTCCT CGAGACATCTGGGCGTGCTTGCCTCAGATTTGTCCTCTCTGTTTCGGTTGCCCTTGTTTA TTCGATGACGGACATGGGAGATCGTTTCAGTGGATCTTTTTATCACCTGTCACTATTCCT ACTTCGTTAAATTATGGACGGGTTGATGTACAAAACTTTAAATTCTTGCGGATGCTACAG GAATTATTAGAATTATATAATAAACGTGTTATCACTTAGCAAAGTGATCGTTTGCTCTGT TTTTTTGGGTATGCTATCCCTTCAGGGGCATTATACATTTCCATTTCTCAACTTAAAAAA AATAACATTTCTCAAGCGAAGTATAAAAGGGTGAAACTCACTAGCCTTTTTCCTCGCGAA CTTCAGTGCGAACCTGTAGTAATATTGTCCAATTGCACGGTTTGGGTTGCCTCGAGGTTT TGGGAATTAAGACTCGGCCAGCTGTCTCCCGAATTATTACCTATTGATGTCAATGTTTGA TCTGAAAAGCAAATCATAGCTTATGGGATCGTCCTATCTTTATTGATTGGAGGCTCCTCC TTAAGCCCTGCCACAAATCATATTGATTGGATGCTCTTTATTGAGTAAGTGCCATACTGT GGCAAAGTTTGGTTATGCAAAAATGTGATGCAATATTGATTGGGGCGTCGTCTAGTTTTA GGTTGTCCCAACTTGTAAGGGCATGCACAATAATCTGATGCGTGCGCTAAGCATATGAAG AATTGAAGACCTTACTAGAGCTCTTTTGGTTGTGAGTGAAGACTACCTTTTCCCTTCTTT TCGAGAGTCTGATCATACAATCATCTCCTGGCAAGTAATGCATACTGAACTTAAAAAGTA GAAGGGATGTGCTAGTAGTAAGTGAATAGGATCTCCATGAAGTTGGTGTTATTCTGATAA CCATGTGGTTGGTACTTCCCATAATGTGTTTTCAAAAGGAACATGACTTATAATTTAGCC ATAATATGTGGGCTACTTTATCAGCAACTTTAACATTTTCCTTCTGATGTGCACTGAAAA TAGATAAGTGACACATGTATTTAGCATGATCTACAATCTCTTATCCACCACAGAAATTTT AACAAGACTGTTATTTTTGCAGGGACCGCTGATTTCACTCCTGTGTGTTTTCAACTCACT TGGGATCCGCGAGAGTGCTGCTATACTGCAGGATCATCGCTTTCTGTTTGGCCTGAGCTG TGGAAGTTTCTAAGTAGAAACTGAGGGTCAGTTCAAAACTTTATCCCACTCACCCCATAC ATACTGGCGAGAAATGGATCGTGATGATGTATCTGGCTTTGTTAGCGGGGGTTGCAAGCT GTTCTGAGTTTTCTAACCTAGTAGAAGTTAATAAATAAAGTTATGATACCAGGAAGTCAG TCAACTGGCGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGAATGGACAAA ACTTCTCATGGCCTTGGATTTGGTGATAGCATCAACTCGTTAAACACTTCTCATTACCGG AGTTCAGTCCAACACACTGCTCAGCATAGAGACACTACACTTGATTCCACATCATATTCC AGCTTCTCATCCACCAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCTGGAGCA GAAGGTACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGAC AATAGCAAAGTAAGCTCTGCCACAGCCTGTGCAATGTCTCCATGCTCGCTAAAGGAGGCT GATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCCCTTGGCAATGATGTT GCACGTTTTCAAAGGAAATCCTCTGCTGGTTTAGTAGCCAATTCTCCTAAACTGGATCTT CAGTTGAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCA CCAAATATTCATGATGGCTTGGACATACCAGTGACCTATTCATTACCAGCCATTATAGGG AATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTTTCATCATCATATGCG TCTGAAGCAACATATGCATTTCCATTTTCGAAGATACCCAGACAAGAGAATGGTACTTTG TCTTCACCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCAGTTGCCTGTACT TCGGTGGTAACTAACCCTCAGCAGCGCAATCTTAACACTAAAACCTGCCAGTTCCCTGGA TGTGGCAAAGGGGCAAGAGGTGCATCAGGGCATTGTATAGCCCATGGTGGTGGTAGGCGA TGCCAGAAAGCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCAT GGTGGAGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGACGCACCGAC CACTGCATTGCCCATGGTGGTGGCCGCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCC CGAGGAAGATCTGGCTTATGCATCAGGCATGGTGGTGGAAAAAGGTGTCAGCAGGAGAAG TGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGC TGCCAGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCACAT GGTGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGAGTGTGCCCCAAGAGCGTGCATGGC GGGACGCAGTACTGTGTTGCGCACGGTGGTGGCAAGAGGTGCGCTATTTCTGATTGCACC AAGAGTGCTAGAGGGCGGACGGAGTACTGCGTGCGCCATGGTGGTGGCAAGAGATGCAGG TTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACTGATTTCTGCAAGGCGCATGGGGGA GGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGCTTCGGTATTGGCACTGAGCAGTGT GATAAGTTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCTAGTCCAGGAC CACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTAATCCACCACTTCGCCGCAGATGTT AAACCCGGCGAGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCG GGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCATGGTGGTGGGCTGCTGGCGCTGCTT TCTCGCGGCGGCAACCACACAGGCCCTGTTGGTAACTCCGATAACGGCGCTTCTGTCATG ATGGCGTGGATGTGAGCGGGCGGGCATTCTCATCAAGAATTGGTTGCTTCAAGTTTTGAT CTGTTTCCAGAGCTAATGCTGTGGCGGGATAAAGTTCCACATTTCACCAATTGTTGTCCT AGTCGTTTGGAACTGGTAGGACATATATCCTCCGTGTAGAATAAATAAGGGAGAGCGTTG TGGGCTTCTCTGTTATTGTAATGTAATTAATTAATTAATGTCGTCAAACTGCCCTTGCTT TGTGTTTATTACAATTTGTGTAATCTGATACTACTTCACAGTTCCTACTTGGATACAATG TCTTCGCAGTTTGCTTTGCTTTGTGTTTCTGGTAACACTGTAGTATGTGCTTTGTGTTTC TGGTAAAGTGGTAATACTGTAGTCTGTAGTACAACTTTTTTGGCGGGTGAGGGTTATCTG GTCATGTCATCAGATAATTCTCTTCCGCCATCAACATCAAGAGATGAATGTTGATGTCCA TATCATTGCTAGAAACTGTAAATTTAGTACCATGAGATGAA
Protein Sequence (607 aa)
>BART1_0-u20988.005 607 150831_barley_pseudomolecules MDKTSHGLGFGDSINSLNTSHYRSSVQHTAQHRDTTLDSTSYSSFSSTNTKALKRKWGTM AGAEGTGDALLTLGLGRSPSSSDNSKVSSATACAMSPCSLKEADEESSVDLSLNFELSLG NDVARFQRKSSAGLVANSPKLDLQLSLSTGSPESAVTCTNMVSPNIHDGLDIPVTYSLPA IIGNGSAPSSWGFEHSVVSSSYASEATYAFPFSKIPRQENGTLSSPVISSTMPASVKSSV ACTSVVTNPQQRNLNTKTCQFPGCGKGARGASGHCIAHGGGRRCQKAGCQKGAEGRTIYC KAHGGGRRCEFLGCTKSAEGRTDHCIAHGGGRRCSNDGCSRAARGRSGLCIRHGGGKRCQ QEKCTKSAEGHSGLCISHGGGRRCQFPECAKGAQGSTKFCKAHGGGKRCLFEGGGVCPKS VHGGTQYCVAHGGGKRCAISDCTKSARGRTEYCVRHGGGKRCRFDGCVKSAQGSTDFCKA HGGGKRCSWGLPGSSFGIGTEQCDKFARSKTGLCSAHTALVQDHCVHGGGTLGPVIHHFA ADVKPGEMEVAAAVKVDPVSMQSGSPLPEPEGRVHGGGLLALLSRGGNHTGPVGNSDNGA SVMMAWM