- Transcript BART1_0-u20322.144
- Transcript IDBART1_0-u20322.144
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.144
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230456524 | 230455783 | + |
| chr3H | 2 | 230456754 | 230456614 | + |
| chr3H | 3 | 230457777 | 230457660 | + |
| chr3H | 4 | 230458200 | 230458030 | + |
| chr3H | 5 | 230459481 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.658553 | 0.295301 | 0.0251302 |
| morex | ETI | 0.840456 | 0.279285 | 0.214145 |
| morex | LEA | 0.761824 | 0.126762 | 0 |
| morex | EPI | 0.311395 | 0.332725 | 0.194896 |
| morex | ROO | 0 | 0.316019 | 0.127583 |
| morex | ROO2 | 0.0784192 | 0.104386 | 0.234806 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.801928 | 1.99119 | 0.460516 |
| morex | INF2 | 1.12977 | 1.38552 | 1.05365 |
| morex | CAR5 | 0.902586 | 0.640745 | 0 |
| morex | CAR15 | 0.437888 | 0.470934 | 0.250968 |
| morex | LEM | 0 | 0 | 0.247457 |
| morex | LOD | 0 | 0 | 0.0886127 |
| morex | PAL | 0.0000000298756 | 0 | 0.216265 |
| morex | SEN | 0.476482 | 0.298583 | 0.23142 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1866 bp)
>BART1_0-u20322.144 1866 150831_barley_pseudomolecules GTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTC ATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAG GCGGAGGTGGCGTTGGTATGCATATCAAACAAGATCTATATGCATTATCTTGAACCTGCA AATGATTCTAGACCAGCAATACAAGTATATGTTCACATATTGATGAAACTGAAAATGCTT CTGCTATTTCAGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAAC GGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTG ACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATC TGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGA TCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATT TTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTG AGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCT ATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGT TTGTGAGATGTTCTTCCATGTAGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAG GTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACG TTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTAT ACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACT ATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGAC AAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATT TATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCAT GGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAAC ACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACC TAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGG TTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTC CACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCA AGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCT AAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATT GAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAG GGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCC CTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTT TTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAA GGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACATCAATCGCCTTTCTGAC CATCGG
Protein Sequence ( aa)
>BART1_0-u20322.144 150831_barley_pseudomolecules