- Transcript BART1_0-u20322.141
- Transcript IDBART1_0-u20322.141
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.141
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454412 | 230454017 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230455917 | 230455549 | + |
| chr3H | 4 | 230456521 | 230456035 | + |
| chr3H | 5 | 230456754 | 230456614 | + |
| chr3H | 6 | 230457777 | 230457669 | + |
| chr3H | 7 | 230458200 | 230458030 | + |
| chr3H | 8 | 230459387 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.722509 | 2.14133 | 1.62848 |
| morex | ETI | 3.81697 | 2.07992 | 3.49035 |
| morex | LEA | 3.04524 | 1.63641 | 1.19087 |
| morex | EPI | 2.21761 | 1.98587 | 2.34462 |
| morex | ROO | 0.362918 | 0.960792 | 0.0558977 |
| morex | ROO2 | 0.687243 | 0.518299 | 0.488076 |
| morex | NOD | 0 | 0.784523 | 2.00353 |
| morex | RAC | 2.41676 | 3.41035 | 3.86232 |
| morex | INF1 | 4.15541 | 5.08919 | 4.42461 |
| morex | INF2 | 7.6336 | 6.12654 | 3.88399 |
| morex | CAR5 | 0 | 3.58702 | 3.52008 |
| morex | CAR15 | 0 | 0.21597 | 0.000000397342 |
| morex | LEM | 3.60704 | 3.69947 | 3.11609 |
| morex | LOD | 4.17062 | 3.16496 | 4.08786 |
| morex | PAL | 2.46141 | 3.01769 | 1.92444 |
| morex | SEN | 3.90884 | 2.62236 | 1.33414 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 2e-65 | 236 | 126/207 (61%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 5e-75 | 261 | 137/211 (65%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2608 bp)
>BART1_0-u20322.141 2608 150831_barley_pseudomolecules TGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGG CCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGG GATGGCCCCATGGTATCGTTAGTCGGCCTTCGATTCCCCTAGCCGCCCGGTTCCCCGCCT CAATCTCCCTCCCGAATCTAATCTGTTTCGATCCTTTTTCGTCCCCTGGTTTTATCTCGT GCTCTGCACCGGACAGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCAC GGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATA AAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGAGAAGCTGGAGGCAAACAGGAGG GCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTG AGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATC GTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAG AACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATC GTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATC TTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATT TACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCA CAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAA TAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAA TGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTAT GTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCG CCAAGGCGGAGGTGGCGTTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGT TAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGA TGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATT TGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCG TTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAA AGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGC AAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGG AGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGAT CAGCATGTTTGTGAGATGTTCTTCCATGTTCAGATTTTCACATGACTGATGCCCAGAGCT AGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACAT ATACGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGATGGTTATACGT TTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCA TTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAA AGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATC AATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGAC TGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACAT GTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGG GCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGA AGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACG TGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGAC TGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAG TAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGT GAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGA GCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTT AGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTAT TAACTTGCTGTGTGTATGTGATTGTGAA
Protein Sequence ( aa)
>BART1_0-u20322.141 150831_barley_pseudomolecules