- Transcript BART1_0-u20322.128
- Transcript IDBART1_0-u20322.128
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.128
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454412 | 230453825 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230456504 | 230455549 | + |
| chr3H | 4 | 230456754 | 230456620 | + |
| chr3H | 5 | 230458200 | 230457660 | + |
| chr3H | 6 | 230459506 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.109698 | 0.124412 | 0.212048 |
| morex | ETI | 0.273729 | 0.371466 | 0.209828 |
| morex | LEA | 0.314657 | 0.0642871 | 0 |
| morex | EPI | 0 | 0 | 0.347473 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.11146 |
| morex | NOD | 0.232217 | 0 | 0 |
| morex | RAC | 0.0129412 | 0.132445 | 0.112635 |
| morex | INF1 | 0.384128 | 0 | 0.264727 |
| morex | INF2 | 0.382073 | 0.314895 | 0.361004 |
| morex | CAR5 | 0.357891 | 0.207043 | 0.636114 |
| morex | CAR15 | 0.747545 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.15297 |
| morex | LOD | 0.586868 | 0.00104873 | 0.458064 |
| morex | PAL | 0 | 0.155684 | 0.328268 |
| morex | SEN | 0.543441 | 0.377426 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 1e-63 | 234 | 126/207 (61%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 2e-73 | 259 | 137/211 (65%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3274 bp)
>BART1_0-u20322.128 3274 150831_barley_pseudomolecules CCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGAC CGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCG CCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCT GTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAA GTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCC TCCTCCCACCGGGATGGCCCCATGGTATCGTTAGTCGGCCTTCGATTCCCCTAGCCGCCC GGTTCCCCGCCTCAATCTCCCTCCCGAATCTAATCTGTTTCGATCCTTTTTCGTCCCCTG GTTTTATCTCGTGCTCTGCACCGGACAGATCAGTGGCTCGACGTGGGCACCTCCGCGCTC ATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACC TCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGAGAAGCTGGAG GCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCG GAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGC CAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCAT GTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGC GCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTAC ACCACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGT AGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGAT GAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTA ATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATATTGATGT TGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATT CTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCATGT TCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTATGCATATCAAACAAGATCTATATGC ATTATCTTGAACCTGCAAATGATTCTAGACCAGCAATACAAGTATATGTTCACATATTGA TGAAACTGAAAATGCTTCTGCTATTTCAGGTTCAACTTGATATTATGCCAGGCGAGAGAC ACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTT GGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGT GGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTT GCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCG GTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGA ATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAAT ATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAA GAATATGATCAGCATGTTTATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGA CTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAA TGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAA ACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGA GATAGTTGTTGGATTGAACAGCCGGAGCGTGGGTATGCTTCAGATTTGTACTATTCTTTA TTAATACCTTCTCTTTCTTTACGAAAATTCACAAATTAGTGATGTGTATTGTGCTTATTT TATTACTTTATTTTTATCCTGTAGGTAAATGCTTCTTTGCGAAGTACAGTTATACAATAT GAATCTTTTAGTCACAATCAGTATTATGCCTTGTACACATTTTTGTTGCGTTGTTGTAGG CTTGTAGCTGAATTTTCTGATGATAGACTGAACTCTATATGCAGTGGCAAGGCAGCTAGA GACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCAC ATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGG CATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAAC AACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTA ACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATC AGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCC TTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCA GCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGG CCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGC ATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGAT CAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACT GCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCA TTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATATTTTAGAAATATTA TAAGGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACATCAATCGCCTTTCT GACCATCGGATCTTTTATAATCAGACCACTTTAA
Protein Sequence ( aa)
>BART1_0-u20322.128 150831_barley_pseudomolecules