- Transcript BART1_0-u20322.120
- Transcript IDBART1_0-u20322.120
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.120
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454148 | 230453813 | + |
| chr3H | 2 | 230454412 | 230454273 | + |
| chr3H | 3 | 230454815 | 230454481 | + |
| chr3H | 4 | 230455917 | 230455544 | + |
| chr3H | 5 | 230456521 | 230456035 | + |
| chr3H | 6 | 230456754 | 230456614 | + |
| chr3H | 7 | 230457777 | 230457660 | + |
| chr3H | 8 | 230458200 | 230458030 | + |
| chr3H | 9 | 230459419 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.0000000463765 | 1.32518 |
| morex | ETI | 0.0000133359 | 0.0000454712 | 0.00822446 |
| morex | LEA | 1.96998 | 0.000000330243 | 1.52148 |
| morex | EPI | 1.69447 | 0.359523 | 1.92848 |
| morex | ROO | 0.00000000164858 | 0.000382757 | 0 |
| morex | ROO2 | 0.000000000671496 | 0.0000617945 | 0 |
| morex | NOD | 0 | 0.0252669 | 0.117962 |
| morex | RAC | 0.0000000020872 | 0.000000813461 | 0.106195 |
| morex | INF1 | 0.250398 | 0 | 0 |
| morex | INF2 | 0 | 0.00000000781343 | 0 |
| morex | CAR5 | 0.00220053 | 0.000104149 | 2.10425 |
| morex | CAR15 | 0.000355406 | 1.64744 | 0.0000000642024 |
| morex | LEM | 0.00000238054 | 0.030219 | 0.0000000353866 |
| morex | LOD | 0.000000519571 | 0.00865272 | 0.0037402 |
| morex | PAL | 0.000000503307 | 0.00194876 | 0.00000233179 |
| morex | SEN | 0.000000197373 | 0.0000142562 | 0.828958 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +3 | 2e-54 | 144 | 83/152 (55%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +3 | 2e-62 | 165 | 92/156 (59%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2734 bp)
>BART1_0-u20322.120 2734 150831_barley_pseudomolecules GTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCC CCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCC CGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGG CCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCG CGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCC TCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGATCAGTGGCTCGACGTGGGCACCT CCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCC GCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGAGA AGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTG CCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCT CGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGG TTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCG GCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTC CTCCCTACACCACGTGGATCTTCCTGGACAATGCAGAAACCAAAGAATGGCCGATGATCA ATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTG GAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGC AGAAGATCAGCTAATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAA TGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTA GTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCAC ACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTTCAACTTGATATT ATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAG ATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAG GCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTC TCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGG ATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTT CCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACA GTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGG CCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATGTTCAGAT TTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGC AGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCT TTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGA ATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAG CCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGC ACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGG CATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACC GGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAG AAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCT TTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAG TTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAG TAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCT GAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATG AGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCG TTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCC CGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTT GTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTG AACTACTTCCATATTTTAGAAATATTATAAGGGA
Protein Sequence (156 aa)
>BART1_0-u20322.120 156 150831_barley_pseudomolecules HPTPRTSLPYAAVIIAEGIPSPRPRPPDPMPDLGGADTSPIAVAPLPPDCGRTASSPTAA ASPCQRTVTPHPVPDHGRLASRRSRWSAYGGSNHRHGVVLLQSLLPPGWPHDQWLDVGTS ALMALHGKLTQMKRQIQQARLTSMRIKHRHHLRNSL