- Transcript BART1_0-u20322.109
- Transcript IDBART1_0-u20322.109
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.109
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454412 | 230453812 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230455710 | 230455544 | + |
| chr3H | 4 | 230456500 | 230456035 | + |
| chr3H | 5 | 230456754 | 230456614 | + |
| chr3H | 6 | 230457777 | 230457669 | + |
| chr3H | 7 | 230458200 | 230458030 | + |
| chr3H | 8 | 230459415 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.0336879 | 0 |
| morex | EPI | 0 | 0 | 0.0331764 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0.244097 |
| morex | RAC | 0 | 0 | 0.000000000539972 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0.00000384122 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.000000777524 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 1e-54 | 144 | 83/152 (55%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 1e-62 | 166 | 92/156 (59%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2618 bp)
>BART1_0-u20322.109 2618 150831_barley_pseudomolecules CGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATC CCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCC CCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCG GCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTC GCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTC CTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGGTATCGTTAGTCGGCCTTCGATT CCCCTAGCCGCCCGGTTCCCCGCCTCAATCTCCCTCCCGAATCTAATCTGTTTCGATCCT TTTTCGTCCCCTGGTTTTATCTCGTGCTCTGCACCGGACAGATCAGTGGCTCGACGTGGG CACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCA GGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAAT TGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGT GGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCT CGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAG GAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAG CTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAA GATTCCTCCCTACACCACGTGGATCTTCCTGGACAATGCAGAAACCAAAGAATGGCCGAT GATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTA ATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACT GAAGCAGAAGATCAGCTAATATGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAG AGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGA GGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGG ATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTA TCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTT GAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATG TGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGT CGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATAT GATCAGCATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGA GCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCA TCGTTAGGCGAACATCTTTCTATTTTGCAGATGGTTATACGTTTGAAACATCAACTGGCC TGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGA TTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAG CAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCA TCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAA CGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGT TAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTC CGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGG AACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCT GCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCA CTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTA GCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTC TTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCAC ATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAG AAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATG TGATTGTGAACTACTTCCATATTTTAGAAATATTATAA
Protein Sequence ( aa)
>BART1_0-u20322.109 150831_barley_pseudomolecules