- Transcript BART1_0-u20322.102
- Transcript IDBART1_0-u20322.102
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.102
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454815 | 230453812 | + |
| chr3H | 2 | 230456500 | 230455544 | + |
| chr3H | 3 | 230456754 | 230456620 | + |
| chr3H | 4 | 230457777 | 230457669 | + |
| chr3H | 5 | 230458200 | 230458030 | + |
| chr3H | 6 | 230459508 | 230458775 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.406122 | 0.166106 | 0.0998269 |
| morex | ETI | 0.662627 | 0.555891 | 0.997608 |
| morex | LEA | 0.117613 | 0.235674 | 0.524711 |
| morex | EPI | 0.489616 | 0.83722 | 0.575405 |
| morex | ROO | 0.0623517 | 0.253588 | 0 |
| morex | ROO2 | 0 | 0.40847 | 0.106422 |
| morex | NOD | 0 | 0.133136 | 0.225572 |
| morex | RAC | 0.461338 | 0.628274 | 0.247268 |
| morex | INF1 | 0.792374 | 0.662668 | 1.13173 |
| morex | INF2 | 1.13706 | 1.00427 | 0.804941 |
| morex | CAR5 | 0.165059 | 0.306475 | 0.353211 |
| morex | CAR15 | 0 | 0.316765 | 0.409274 |
| morex | LEM | 0.517512 | 0.665949 | 0.465713 |
| morex | LOD | 0.791685 | 0.0757243 | 0.388534 |
| morex | PAL | 0.458853 | 0.295317 | 0.294955 |
| morex | SEN | 0.361029 | 0.68879 | 0.293485 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 5e-53 | 125 | 66/114 (58%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 5e-57 | 147 | 76/116 (66%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3110 bp)
>BART1_0-u20322.102 3110 150831_barley_pseudomolecules CGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATC CCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCC CCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCG GCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTC GCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTC CTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGGTATCGTTAGTCGGCCTTCGATT CCCCTAGCCGCCCGGTTCCCCGCCTCAATCTCCCTCCCGAATCTAATCTGTTTCGATCCT TTTTCGTCCCCTGGTTTTATCTCGTGCTCTGCACCGGACAGATCAGTGGCTCGACGTGGG CACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCA GGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAAT TGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTG TTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTG TTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTG TCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCG GGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTG CTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCG GTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAATGCAGAAACCAAAGAA TGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACG AGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATG TTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAATATATATTGGCCAATTG AGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACATATT CTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATTTTGCATG TTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGT ATGCATATCAAACAAGATCTATATGCATTATCTTGAACCTGCAAATGATTCTAGACCAGC AATACAAGTATATGTTCACATATTGATGAAACTGAAAATGCTTCTGCTATTTCAGGTTCA ACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCG AGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCAC AGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGG CTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAG GCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTC TACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTA GATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATG AACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATATTTTCACATGACTGATGC CCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTA TGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGATGG TTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAA AACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAG AGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCA CATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACG GCATGGACTGAGGCAGCCGATGTGAACGAACACCGGTCGTTTGTAACAGGTACCCATAAA CAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCT GCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGA TCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTC TGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCT TCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGG TGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAG CCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCAT GTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGG CTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAA GATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATA TTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACA TCAATCGCCTTTCTGACCATCGGATCTTTTATAATCAGACCACTTTAAAG
Protein Sequence ( aa)
>BART1_0-u20322.102 150831_barley_pseudomolecules