- Transcript BART1_0-u20322.097
- Transcript IDBART1_0-u20322.097
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.097
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454412 | 230453809 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230456754 | 230455549 | + |
| chr3H | 4 | 230457777 | 230457650 | + |
| chr3H | 5 | 230458200 | 230458030 | + |
| chr3H | 6 | 230459481 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.00328419 | 0 |
| morex | ETI | 0.317097 | 0.152658 | 0.371743 |
| morex | LEA | 0 | 0.169962 | 0.259146 |
| morex | EPI | 0 | 0 | 0.00633988 |
| morex | ROO | 0 | 0.14642 | 0.00000000179515 |
| morex | ROO2 | 0 | 0.119617 | 0.204779 |
| morex | NOD | 0 | 0.151338 | 0.429836 |
| morex | RAC | 0.0383652 | 0.135466 | 0 |
| morex | INF1 | 0.57187 | 0.674622 | 0.279238 |
| morex | INF2 | 0.922861 | 0 | 0.298432 |
| morex | CAR5 | 1.4035 | 0 | 0.329058 |
| morex | CAR15 | 0.25367 | 0.271377 | 0.943817 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.0349956 | 0.00000137721 | 0 |
| morex | PAL | 0.109871 | 0 | 0 |
| morex | SEN | 0.236655 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 1e-63 | 233 | 126/207 (61%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 2e-73 | 259 | 137/211 (65%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3138 bp)
>BART1_0-u20322.097 3138 150831_barley_pseudomolecules TATCGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGG ATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACG TCCCCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACC GCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGC CTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTC GTCCTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGGTATCGTTAGTCGGCCTTCG ATTCCCCTAGCCGCCCGGTTCCCCGCCTCAATCTCCCTCCCGAATCTAATCTGTTTCGAT CCTTTTTCGTCCCCTGGTTTTATCTCGTGCTCTGCACCGGACAGATCAGTGGCTCGACGT GGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCA GCAGGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTG AATTGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGA TGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCA GCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGA GAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTG CAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGA TAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGA TCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAAT CTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGA AGCAGAAGATCAGCTAATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTT TAATGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGAC TTAGTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGG CACACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTATGCATATCA AACAAGATCTATATGCATTATCTTGAACCTGCAAATGATTCTAGACCAGCAATACAAGTA TATGTTCACATATTGATGAAACTGAAAATGCTTCTGCTATTTCAGGTTCAACTTGATATT ATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAG ATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAG GCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTC TCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGG ATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTT CCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACA GTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGG CCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATGTAGTTAA CTACTATTTAGACCTTAGTTTTTTGGAAAGTCAATACATTTTTAATAGTAACTGATTTTT TATGCTTCCATGTTTTTGGCTTAGGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGC AGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATA CGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGTCTTTTGCAGCAAGT GCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGG AGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAG GCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTG GAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTT AGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGA GGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGG TGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCA TCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTG TTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTC TTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCG CTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGA AAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGT ACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGG CCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTT GAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATATTTTA GAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACATCAAT CGCCTTTCTGACCATCGG
Protein Sequence ( aa)
>BART1_0-u20322.097 150831_barley_pseudomolecules