- Transcript BART1_0-u20322.095
- Transcript IDBART1_0-u20322.095
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.095
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454148 | 230453808 | + |
| chr3H | 2 | 230454815 | 230454273 | + |
| chr3H | 3 | 230455710 | 230455544 | + |
| chr3H | 4 | 230456754 | 230456411 | + |
| chr3H | 5 | 230457777 | 230457660 | + |
| chr3H | 6 | 230458200 | 230458030 | + |
| chr3H | 7 | 230459452 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.184981 | 0.401831 | 0 |
| morex | ETI | 1.03374 | 0.630458 | 0.156092 |
| morex | LEA | 0 | 0.241886 | 0.0000000146403 |
| morex | EPI | 0.418278 | 0.635014 | 0.510513 |
| morex | ROO | 0.00000000320307 | 0.162383 | 0 |
| morex | ROO2 | 0.328147 | 0.62714 | 0 |
| morex | NOD | 0.28919 | 0.290522 | 0.21941 |
| morex | RAC | 0.586343 | 0.518475 | 0.396311 |
| morex | INF1 | 0.386405 | 1.05384 | 0.806112 |
| morex | INF2 | 0.58105 | 1.31992 | 0.889762 |
| morex | CAR5 | 0.627267 | 0.10496 | 0.365517 |
| morex | CAR15 | 0.423969 | 0.543494 | 1.08816 |
| morex | LEM | 1.13899 | 0.581882 | 1.27576 |
| morex | LOD | 0.988623 | 1.06335 | 0.932967 |
| morex | PAL | 1.0267 | 0.660918 | 0.277297 |
| morex | SEN | 0.723174 | 0.61193 | 0.179573 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 1e-51 | 125 | 66/114 (58%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 2e-55 | 147 | 76/113 (67%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2349 bp)
>BART1_0-u20322.095 2349 150831_barley_pseudomolecules CTATCGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGG GATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACAC GTCCCCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGAC CGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCG CCTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGT CGTCCTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGATCAGTGGCTCGACGTGGG CACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCA GGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAAT TGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTG TTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTG TTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTG TCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCG GGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTG CTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCG GTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAATGCAGAAACCAAAGAA TGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACG AGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATG TTTTCACTGAAGCAGAAGATCAGCTAATATGTGCAGGAAGTAAAATATGCGTCGGAGACG GCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCA TGTTTGTGAGATGTTCTTCCATGTAGTTAACTACTATTTAGACCTTAGTTTTTTGGAAAG TCAATACATTTTTAATAGTAACTGATTTTTTATGCTTCCATGTTTTTGGCTTAGGTTCAG ATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCG GCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACAT CTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAA GAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAAC AGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTC GCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATT GGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACA CCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTA AGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTT CTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTA AGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTA AGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAAT CTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCA TGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATC CGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTC CCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATAT TTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTG TGAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGAT CTGTCTGTG
Protein Sequence (158 aa)
>BART1_0-u20322.095 158 150831_barley_pseudomolecules YRHPTPRTSLPYAAVIIAEGIPSPRPRPPDPMPDLGGADTSPIAVAPLPPDCGRTASSPT AAASPCQRTVTPHPVPDHGRLASRRSRWSAYGGSNHRHGVVLLQSLLPPGWPHDQWLDVG TSALMALHGKLTQMKRQIQQARLTSMRIKHRHHLRNSL