- Transcript BART1_0-u20322.088
- Transcript IDBART1_0-u20322.088
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.088
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454148 | 230453800 | + |
| chr3H | 2 | 230454412 | 230454273 | + |
| chr3H | 3 | 230454815 | 230454501 | + |
| chr3H | 4 | 230455917 | 230455544 | + |
| chr3H | 5 | 230456521 | 230456035 | + |
| chr3H | 6 | 230456754 | 230456614 | + |
| chr3H | 7 | 230457777 | 230457660 | + |
| chr3H | 8 | 230458200 | 230458030 | + |
| chr3H | 9 | 230459402 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.05316 | 2.48705 | 0.442294 |
| morex | ETI | 7.11653 | 7.16497 | 6.97457 |
| morex | LEA | 0.000121702 | 2.22105 | 0.0345625 |
| morex | EPI | 4.2414 | 3.3992 | 4.1895 |
| morex | ROO | 1.20854 | 0.955042 | 0.177878 |
| morex | ROO2 | 0.000000821098 | 0.50316 | 1.00827 |
| morex | NOD | 0.635692 | 2.19725 | 2.39786 |
| morex | RAC | 6.6922 | 6.66722 | 6.50899 |
| morex | INF1 | 0.399449 | 4.661 | 5.66697 |
| morex | INF2 | 8.79425 | 7.60402 | 7.96949 |
| morex | CAR5 | 6.81896 | 11.5453 | 6.1395 |
| morex | CAR15 | 4.15499 | 1.28305 | 3.14892 |
| morex | LEM | 5.23794 | 2.95382 | 5.78437 |
| morex | LOD | 4.07743 | 6.08608 | 4.48019 |
| morex | PAL | 4.74635 | 3.84551 | 5.321 |
| morex | SEN | 4.56177 | 4.37059 | 2.32625 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 1e-49 | 110 | 61/109 (56%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 2e-58 | 137 | 72/108 (67%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2710 bp)
>BART1_0-u20322.088 2710 150831_barley_pseudomolecules AAAAAACCCTATCGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCATC GCCGAGGGGATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGC GCCGACACGTCCCCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCG TCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGAC CACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCGC CATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGATCAGTGGCTC GACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAA ATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTCC TTGTGAATTGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGC GGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGG CCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCA TGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGG CGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTA CACCACGTGGATCTTCCTGGACAATGCAGAAACCAAAGAATGGCCGATGATCAATCAATT GCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAA AGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGAT CAGCTAATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATAT TGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAG ACTATTCTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCG GCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTTCAACTTGATATTATGCCAG GCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTG TCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCC GTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTA TGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTA GGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAG CAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGG AAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAG GGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATGTTCAGATTTTCACA TGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAA GGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATT TTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAG AGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGC GTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTA TAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTA ATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACC CATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAAT CAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAA GTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGA CAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCC ATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGC GGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCC AAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCG ACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATA TGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAG TTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACT TCCATATTTT
Protein Sequence (161 aa)
>BART1_0-u20322.088 161 150831_barley_pseudomolecules KKPYRHPTPRTSLPYAAVIIAEGIPSPRPRPPDPMPDLGGADTSPIAVAPLPPDCGRTAS SPTAAASPCQRTVTPHPVPDHGRLASRRSRWSAYGGSNHRHGVVLLQSLLPPGWPHDQWL DVGTSALMALHGKLTQMKRQIQQARLTSMRIKHRHHLRNSL