- Transcript BART1_0-u20322.083
- Transcript IDBART1_0-u20322.083
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.083
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454148 | 230453799 | + |
| chr3H | 2 | 230454815 | 230454273 | + |
| chr3H | 3 | 230455917 | 230455549 | + |
| chr3H | 4 | 230456521 | 230456035 | + |
| chr3H | 5 | 230456754 | 230456614 | + |
| chr3H | 6 | 230457777 | 230457669 | + |
| chr3H | 7 | 230458200 | 230458030 | + |
| chr3H | 8 | 230459509 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.396042 | 0 | 0 |
| morex | ETI | 2.16599 | 2.02103 | 1.37111 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0.000000000981433 | 0.00000000979459 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 1.23159 | 0 | 0 |
| morex | RAC | 0.000000000642602 | 0.00563502 | 0 |
| morex | INF1 | 0 | 0 | 0.000000000420676 |
| morex | INF2 | 0 | 0 | 0.00427028 |
| morex | CAR5 | 5.22725 | 0.000653217 | 0.250703 |
| morex | CAR15 | 0.666771 | 1.53715 | 0.00913436 |
| morex | LEM | 1.61805 | 0.98744 | 0.0000138286 |
| morex | LOD | 0 | 0 | 0.00000502292 |
| morex | PAL | 0.00000000204128 | 0 | 1.25486 |
| morex | SEN | 0 | 0 | 0.00000212195 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 2e-59 | 214 | 109/169 (64%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 6e-67 | 239 | 121/168 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2892 bp)
>BART1_0-u20322.083 2892 150831_barley_pseudomolecules CAAAAAACCCTATCGTCATCCTACCCCCCGCACATCGCTACCCTATGCCGCCGTCATCAT CGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGG CGCCGACACGTCCCCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCGGCAGGACCGCCTC GTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGA CCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCGGCTCGAACCATCG CCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCCATGATCAGTGGCT CGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCA AATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACGGAATTC CTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGAGCTTGTGTGCC TATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACC GGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGC AATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCG AGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGG ATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAG CTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAAAAACCAA AGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGC AACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAG CATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAATATATATTGGCCA ATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACA TATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATTTTG CATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGT TGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTC GCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTG ACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTC ACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCACT CGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGC GATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGA ACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCAT CAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAGATG TTCTTCCATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGA GCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCA TCGTTAGGCGAACATCTTTCTATTTTGCAGATGGTTATACGTTTGAAACATCAACTGGCC TGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGA TTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAG CAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCA TCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAA CGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGT TAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTC CGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGG AACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCT GCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCA CTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTA GCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTC TTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCAC ATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAG AAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATG TGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCG GCGGATCTGTCTGTGTGCACATCAATCGCCTTTCTGACCATCGGATCTTTTATAATCAGA CCACTTTAAAGC
Protein Sequence (161 aa)
>BART1_0-u20322.083 161 150831_barley_pseudomolecules KKPYRHPTPRTSLPYAAVIIAEGIPSPRPRPPDPMPDLGGADTSPIAVAPLPPDCGRTAS SPTAAASPCQRTVTPHPVPDHGRLASRRSRWSAYGGSNHRHGVVLLQSLLPPGWPHDQWL DVGTSALMALHGKLTQMKRQIQQARLTSMRIKHRHHLRNSL