Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u20322.074

ChromosomeExonStartStopDirection
chr3H1230454148230453786+
chr3H2230454815230454273+
chr3H3230455917230455549+
chr3H4230456521230456035+
chr3H5230456754230456620+
chr3H6230457777230457660+
chr3H7230458200230458030+
chr3H8230459518230458788+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000.00113182
morexETI1.09911.537951.5594
morexLEA000
morexEPI0.7099051.057310.178877
morexROO00.0000005989130.0739801
morexROO2000
morexNOD0.031348600
morexRAC00.000002713640
morexINF1000
morexINF2000.726776
morexCAR50.5464430.00005483360.000000466003
morexCAR1500.3044420.00000000236675
morexLEM0.05114460.5616411.14201
morexLOD0.000000007707090.00001335090.00000281501
morexPAL0.5890610.8748520.433085
morexSEN00.004243240



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g19480.1 +2 3e-59 214 109/169 (64%) protein|SET domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g64460.4.p +2 7e-67 239 121/168 (72%) pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2917 bp)

>BART1_0-u20322.074 2917 150831_barley_pseudomolecules
TGAGATTGCGCGTCAAAAAACCCTATCGTCATCCTACCCCCCGCACATCGCTACCCTATG
CCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGC
CTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCCCCGCTCCCTCCAGATTGCG
GCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTC
ACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTACGGCG
GCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGGGATGGCCCC
ATGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGC
AGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATC
ATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTT
GAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTT
GCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGG
CTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGG
GTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCT
GTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTT
GTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCT
GGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTA
TGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACC
TGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAA
TATATATTGGCCAATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAATGCTT
GTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTC
ATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAG
GCGGAGGTGGCGTTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGG
AACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAG
CTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGC
ATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCC
GGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGA
ATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCC
GTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACG
GCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCA
TGTTTGTGAGATGTTCTTCCATATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCA
GGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGC
CAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTT
GAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATT
TGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAG
GGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAA
TTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTG
AGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGT
ACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGC
ATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAG
ACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTG
AACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTG
GCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTA
GCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGA
GCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGC
AGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAG
TTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTA
ACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAAA
AGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACATCAATCGCCTTTCTGACCATCGG
ATCTTTTATAATCAGACCACTTTAAAGCATCTTTTTT



Protein Sequence ( aa)

>BART1_0-u20322.074  150831_barley_pseudomolecules