- Transcript BART1_0-u20322.058
- Transcript IDBART1_0-u20322.058
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.058
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454815 | 230453781 | + |
| chr3H | 2 | 230455710 | 230455549 | + |
| chr3H | 3 | 230456500 | 230456416 | + |
| chr3H | 4 | 230456754 | 230456614 | + |
| chr3H | 5 | 230457777 | 230457660 | + |
| chr3H | 6 | 230458200 | 230458030 | + |
| chr3H | 7 | 230459429 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.117641 | 0.132685 |
| morex | ETI | 0.515049 | 0.46706 | 0.288323 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.231089 | 0 | 0 |
| morex | NOD | 0.313464 | 0 | 0 |
| morex | RAC | 0.209679 | 0 | 0.518857 |
| morex | INF1 | 0.000138076 | 0 | 0.444092 |
| morex | INF2 | 0.4587 | 0 | 1.35852 |
| morex | CAR5 | 0.853836 | 0.455306 | 0.487872 |
| morex | CAR15 | 0.261792 | 0.0184117 | 0.564841 |
| morex | LEM | 0.686814 | 0.50838 | 0.484257 |
| morex | LOD | 0.380725 | 0.0958332 | 0.350914 |
| morex | PAL | 0.268113 | 0.216207 | 0.262667 |
| morex | SEN | 0.40063 | 0.0680859 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 9e-60 | 216 | 110/170 (65%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 3e-68 | 240 | 122/169 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2354 bp)
>BART1_0-u20322.058 2354 150831_barley_pseudomolecules GTACGTGAGATTGCGCGTCAAAAAACCCTATCGTCATCCTACCCCCCGCACATCGCTACC CTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCACCCGATCC CATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCCCCGCTCCCTCCAGA TTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGAC GCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGGCCTA CGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGGGATG GCCCCATGGTATCGTTAGTCGGCCTTCGATTCCCCTAGCCGCCCGGTTCCCCGCCTCAAT CTCCCTCCCGAATCTAATCTGTTTCGATCCTTTTTCGTCCCCTGGTTTTATCTCGTGCTC TGCACCGGACAGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGA AGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGC ATCGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCC TCCTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAG GAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGC GTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAG GATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGA GGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAAC CATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTG GATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAG AATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAAT TGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGAA GTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGG ACATCAAGAATATGATCAGCATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAG GTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACG TTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTAT ACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACT ATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGAC AAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATT TATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCAT GGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAAC ACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACC TAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGG TTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTC CACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCA AGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCT AAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATT GAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAG GGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCC CTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTT TTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAA GGGAAAAGTTTTTG
Protein Sequence ( aa)
>BART1_0-u20322.058 150831_barley_pseudomolecules