- Transcript BART1_0-u20322.056
- Transcript IDBART1_0-u20322.056
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.056
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454148 | 230453779 | + |
| chr3H | 2 | 230454815 | 230454273 | + |
| chr3H | 3 | 230455710 | 230455549 | + |
| chr3H | 4 | 230455917 | 230455903 | + |
| chr3H | 5 | 230456504 | 230456035 | + |
| chr3H | 6 | 230456754 | 230456614 | + |
| chr3H | 7 | 230457777 | 230457660 | + |
| chr3H | 8 | 230458200 | 230458030 | + |
| chr3H | 9 | 230459420 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 1.74947 | 0.856931 | 0.551358 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0.433175 | 0.279274 | 0.00000444168 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.123367 | 0 | 0 |
| morex | RAC | 0.0612831 | 0.25377 | 0.079648 |
| morex | INF1 | 0.0000133877 | 0.162626 | 0.344843 |
| morex | INF2 | 0 | 0.34516 | 0.17 |
| morex | CAR5 | 0.43343 | 0.158297 | 1.47554 |
| morex | CAR15 | 0.176065 | 0.408472 | 0 |
| morex | LEM | 0.55096 | 0.259714 | 0.666461 |
| morex | LOD | 0.248992 | 0.000000606554 | 0 |
| morex | PAL | 0.487945 | 0.770144 | 0.000000000268713 |
| morex | SEN | 0.534128 | 0.5874 | 0.274369 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +3 | 1e-59 | 215 | 114/190 (60%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +3 | 1e-67 | 240 | 121/169 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2623 bp)
>BART1_0-u20322.056 2623 150831_barley_pseudomolecules CCGTACGTGAGATTGCGCGTCAAAAAACCCTATCGTCATCCTACCCCCCGCACATCGCTA CCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCACCCGAT CCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCCCCGCTCCCTCCA GATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAACGGTG ACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGTCGGCC TACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCACCGGGA TGGCCCCATGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAG CTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCAT CGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCTC CTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGGA GGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGT TGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGA TCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGG AGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCA TCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGA TCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAA TTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTG CACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGCGGA GGTGGCGTTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGG CCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGAC ACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTG GTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATC AATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTT GTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAG ATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTAT GAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTT GTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCC CATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGC GAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCC TGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGA TTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAG CAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCA TCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAA CGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGT TAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTC CGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGG AACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCT GCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCA CTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTA GCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTC TTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCAC ATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAG AAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATG TGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAA
Protein Sequence ( aa)
>BART1_0-u20322.056 150831_barley_pseudomolecules