Exon Structure of BART1_0-u20322.040

ChromosomeExonStartStopDirection
chr3H1230454148230453767+
chr3H2230454815230454273+
chr3H3230455917230455549+
chr3H4230456521230456035+
chr3H5230456754230456614+
chr3H6230457777230457660+
chr3H7230458200230458030+
chr3H8230459552230458788+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB0.0000004146690.0000000009275360.682786
morexETI0.00484640.00008169930.364648
morexLEA0.25669900
morexEPI0.05921460.1000030
morexROO0.1897640.2666910
morexROO2000
morexNOD0.0042645900
morexRAC000
morexINF11.8565600.000000463757
morexINF20.87017100.305944
morexCAR50.000003776270.007701020.000883408
morexCAR150.000000625470.00004050460
morexLEM0.813940.0004608180
morexLOD000
morexPAL0.000000356940.00000002259070.0000604588
morexSEN0.38783600



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g19480.1 +3 3e-59 214 109/169 (64%) protein|SET domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g64460.4.p +3 8e-67 239 121/168 (72%) pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2976 bp)

>BART1_0-u20322.040 2976 150831_barley_pseudomolecules
ATCAAAACAGCCCCGTACGTGAGATTGCGCGTCAAAAAACCCTATCGTCATCCTACCCCC
CGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCG
CGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCC
CCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGT
CAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGT
AGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTC
CTCCCACCGGGATGGCCCCATGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCG
CTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATG
AGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTC
AATGTGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGG
AGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGG
CGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACG
GCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGC
ATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACG
GCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCT
ACACCACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTG
GTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTG
ATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGC
TAATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATATTGAT
GTTGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTA
TTCTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCAT
GTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTTCAACTTGATATTATGCCAGGCGA
GAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGT
CCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCA
AGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCA
CGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTT
TTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAAT
TGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGT
AAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGAC
ATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATGTTCAGATTTTCACATGAC
TGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGA
TACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGC
AGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGC
CCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGG
TGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGG
TCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAA
TTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATA
AACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGG
CTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGA
GATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAAT
TCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCC
CTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCT
GGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAAT
AGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTC
ATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTT
GGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTT
AAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCA
TATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCA
CATCAATCGCCTTTCTGACCATCGGATCTTTTATAATCAGACCACTTTAAAGCATCTTTT
TTTATAGTTTAAATTTGCAACTGATCCATTGTCGCA



Protein Sequence ( aa)

>BART1_0-u20322.040  150831_barley_pseudomolecules