- Transcript BART1_0-u20322.036
- Transcript IDBART1_0-u20322.036
- Gene IDBART1_0-u20322
Barley RTD
Exon Structure of BART1_0-u20322.036
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454815 | 230453767 | + |
| chr3H | 2 | 230455917 | 230455549 | + |
| chr3H | 3 | 230456521 | 230456035 | + |
| chr3H | 4 | 230456754 | 230456620 | + |
| chr3H | 5 | 230457777 | 230457660 | + |
| chr3H | 6 | 230458200 | 230458030 | + |
| chr3H | 7 | 230459501 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.114695 | 0 |
| morex | ROO2 | 0 | 0.0000000112295 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.00272024 | 0 | 0 |
| morex | INF2 | 1.8293 | 0 | 0.78841 |
| morex | CAR5 | 0 | 0 | 0.000170966 |
| morex | CAR15 | 0 | 0.0000225439 | 0.00204787 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 4e-59 | 214 | 109/169 (64%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 3e-66 | 238 | 121/168 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3043 bp)
>BART1_0-u20322.036 3043 150831_barley_pseudomolecules ATCAAAACAGCCCCGTACGTGAGATTGCGCGTCAAAAAACCCTATCGTCATCCTACCCCC CGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCG CGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCC CCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGT CAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGT AGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTC CTCCCACCGGGATGGCCCCATGGTATCGTTAGTCGGCCTTCGATTCCCCTAGCCGCCCGG TTCCCCGCCTCAATCTCCCTCCCGAATCTAATCTGTTTCGATCCTTTTTCGTCCCCTGGT TTTATCTCGTGCTCTGCACCGGACAGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCAT GGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTC CATGAGGATAAAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTC ACTCAATGTGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAG CTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCC AAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCG GACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTT GTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGC AACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCT CCCTACACCACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATT GCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAA AGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGAT CAGCTAATATGGTAATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATAT TGATGTTGAACTTGAAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAG ACTATTCTTTAATACTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCG GCATGTTCGATGTGGCCGCCAAGGCGGAGGTGGCGTTGGTTCAACTTGATATTATGCCAG GCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTG TCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCC GTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTA TGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTA GGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAG CAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGG AAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAG GGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATATTTTCACATGACTG ATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATA CTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAG CAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCC TCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTG GCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTC TCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATT TTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAA CAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCT GCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGTGAGA TCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAAGTTGCGGACAATTC TGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCT TCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATCTGAGAGGCGGCTGG TGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAG CCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCAT GTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCCCCGGTATATGTTGG CTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATTTGTAGTAGTTTTAA GATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGTGAACTACTTCCATA TTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGATCTGTCTGTGTGCACA TCAATCGCCTTTCTGACCATCGGATCTTTTATAATCAGACCAC
Protein Sequence ( aa)
>BART1_0-u20322.036 150831_barley_pseudomolecules