- Transcript BART1_0-u19873.013
- Transcript IDBART1_0-u19873.013
- Gene IDBART1_0-u19873
Barley RTD
Exon Structure of BART1_0-u19873.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 216306264 | 216305954 | + |
| chr3H | 2 | 216306856 | 216306451 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0.576725 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.89836 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0.296561 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g16210.1 | +3 | 3e-42 | 141 | 78/110 (71%) | protein|uncharacterized Cys-rich domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g09980.1.p | +3 | 4e-45 | 149 | 78/104 (75%) | pacid=32778952 transcript=Bradi2g09980.1 locus=Bradi2g09980 ID=Bradi2g09980.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (717 bp)
>BART1_0-u19873.013 717 150831_barley_pseudomolecules ATCAGGACATGCATAAAAATACCCTTTAATTGCAGGAAAGGAAAACTGTTCTTATGCCCT AAATTGTTCTCGTCTTATTTCTAGGTTGTATTGGTGCGACTTGCCCCTGCTTTCTTTTTG GAAAAAATGCACAGTTCTTGGGATCTGGAACTCTCGCTGGATCATGCACCACCCATTGCA TGCTTTGGGGCCTTCTGACAAGTTTCTGCTGTCTGTGTACTGGGGGGCTTGTATTAGCAG TTCCAGGGTCTGCTGTTGCTTGTTATGCTTGTGGATACCGCCAAGCACTAAGAACGAAGT ACAACCTTCCGCACCATGCGGCGATTTGACGACGCACTTATTTTGCCATCTGTGTGCGAT ATGCCAAGAGTACAGGGAGATCCGCGAGAGATCAGACAGTAGCGCCTCTTCAGCTCCTGA TGTTACTCCACCTCCTGTGCAGACAATGGATGACCTTTGACTGAGTAGATGACGAGAACA TATCCTGCCTGGCAAATCTTTGGTTGGCTTGACATGCCCTTGCCTGTAAGTATTTGTGTT ACTGTGCACTGCTCCCACAGCTACGATGTCAGATTTTATGCAGCTGGTGTAAAGATAACC TGTAAACTAATGGACAGCGCGAGAAAATGTAACCCTTTTGTTGCACGATTATAGCATGTA ACATTTTTTCTTCATACATGTAGAAATGAAATGGAAACAAAGAGTGTTCTCCTGGAC
Protein Sequence ( aa)
>BART1_0-u19873.013 150831_barley_pseudomolecules