- Gene BART1_0-u19873
- Gene IDBART1_0-u19873
- Location chr3H: 216303298 - 216306962
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU3Hr1G037940 | 95.0 | + | + | 3480 | -185 | Containing |
Transcripts from Gene BART1_0-u19873
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u19873.001 | 1389 | 1389 bp MSTRG.19873.1 MSTRG.19873 |
| BART1_0-u19873.002 | 1600 | 1600 bp MSTRG.19873.2 MSTRG.19873 |
| BART1_0-u19873.003 | 1432 | 1432 bp MSTRG.19873.3 MSTRG.19873 |
| BART1_0-u19873.004 | 1234 | 1234 bp MSTRG.19873.4 MSTRG.19873 |
| BART1_0-u19873.005 | 1126 | 1126 bp MSTRG.19873.5 MSTRG.19873 |
| BART1_0-u19873.006 | 1258 | 1258 bp MSTRG.19873.6 MSTRG.19873 |
| BART1_0-u19873.007 | 1275 | 1275 bp MSTRG.19873.7 MSTRG.19873 |
| BART1_0-u19873.008 | 1070 | 1070 bp MSTRG.19873.8 MSTRG.19873 |
| BART1_0-u19873.009 | 2442 | 2442 bp MSTRG.19873.9 MSTRG.19873 |
| BART1_0-u19873.010 | 1330 | 1330 bp MSTRG.19873.10 MSTRG.19873 |
| BART1_0-u19873.011 | 1215 | 1215 bp MSTRG.19873.11 MSTRG.19873 |
| BART1_0-u19873.012 | 1162 | 1162 bp MSTRG.19873.12 MSTRG.19873 |
| BART1_0-u19873.013 | 717 | 717 bp MSTRG.19873.13 MSTRG.19873 |
Exon Structure of BART1_0-u19873
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g16210.1 | +2 | 4e-70 | 228 | 112/125 (90%) | protein|uncharacterized Cys-rich domain containing protein, putative, expressed |
| TAIR PP10 | AT2G40935 @ ARAPORT AT2G40935.2 @ TAIR |
+2 | 1e-45 | 161 | 75/128 (59%) | Symbols: | PLAC8 family protein | chr2:17083336-17084216 FORWARD LENGTH=166 |
| BRACH PP3 | Bradi2g09980.1.p | +2 | 2e-65 | 216 | 115/124 (93%) | pacid=32778952 transcript=Bradi2g09980.1 locus=Bradi2g09980 ID=Bradi2g09980.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016021 | integral component of membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons