- Transcript BART1_0-u19873.008
- Transcript IDBART1_0-u19873.008
- Gene IDBART1_0-u19873
Barley RTD
Exon Structure of BART1_0-u19873.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 216303945 | 216303515 | + |
| chr3H | 2 | 216304733 | 216304557 | + |
| chr3H | 3 | 216306908 | 216306447 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.115163 | 2.68599 | 0 |
| morex | ETI | 0 | 1.27098 | 0.259185 |
| morex | LEA | 0 | 1.5452 | 1.45288 |
| morex | EPI | 0 | 0 | 1.70496 |
| morex | ROO | 0.830534 | 0.938678 | 0.706286 |
| morex | ROO2 | 0.577514 | 0.411385 | 0.681427 |
| morex | NOD | 3.23553 | 0.997355 | 0 |
| morex | RAC | 0 | 0.631857 | 0 |
| morex | INF1 | 1.38606 | 0.000474268 | 2.80703 |
| morex | INF2 | 0.0000017037 | 0.00249334 | 3.31637 |
| morex | CAR5 | 0 | 3.58582 | 0.81099 |
| morex | CAR15 | 0 | 0.655967 | 0 |
| morex | LEM | 1.09692 | 1.00177 | 1.37844 |
| morex | LOD | 0 | 1.31783 | 1.40169 |
| morex | PAL | 0.850517 | 0.956088 | 0 |
| morex | SEN | 0.898344 | 1.25253 | 0.410971 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1070 bp)
>BART1_0-u19873.008 1070 150831_barley_pseudomolecules CGCGAATCTCAAAGCGCTGCGGCGGTTTCTCAAGGTGAGCTTCCTCGGAACGTGTTACGT GTTCTCCGGTTCTTCCCCGAGCTAAGCTCGACCTCGCCCTCCCGTCCATTCCTAACACGC ACCGGATATCTCCTCCTGCCGAAGCGCATGTACGACGCCGGCAATACAGCCACCGGCTCC CCTCCCCTTCCCTCTTATCTGCCGCCCGAATATCCGACGGGTGGCATCCGACGCGATTTT CTTTTGTTGGCTTTTGCCCAAATCTCACCTCGTTCCTGGATCGGGTTTCTGCTTTCTTTC TTGATCAATTGAAATCTGGAATCCGCAGCTCGGGCATTCGGCGGACAGAGCGTTCCGGAA CTGGTGAGGCGAGGCCGCGGATAAGCACCAATTTGGTCGTCGGCGCTTCAGGGGTCTTTA CCGATTTATTGAGATGGTTGGAAAAGGAAGCTATGTTCCGCCGCAGTATGTTCCGTTATA TGGTGTAGATACTGAGGAGGATAGCGTTCCTGAGGTGGAGGAGAACATTGCCACGCGCCA AAGATTAAGCAGGGATCCTACACAATGGTCTTCAGGCATCTGTGCTTGTTTTGATGATCC ACAGAGCTGAAGCACCATGCGGCGATTTGACGACGCACTTATTTTGCCATCTGTGTGCGA TATGCCAAGAGTACAGGGAGATCCGCGAGAGATCAGACAGTAGCGCCTCTTCAGCTCCTG ATGTTACTCCACCTCCTGTGCAGACAATGGATGACCTTTGACTGAGTAGATGACGAGAAC ATATCCTGCCTGGCAAATCTTTGGTTGGCTTGACATGCCCTTGCCTGTAAGTATTTGTGT TACTGTGCACTGCTCCCACAGCTACGATGTCAGATTTTATGCAGCTGGTGTAAAGATAAC CTGTAAACTAATGGACAGCGCGAGAAAATGTAACCCTTTTGTTGCACGATTATAGCATGT AACATTTTTTCTTCATACATGTAGAAATGAAATGGAAACAAAGAGTGTTCTCCTGGACAT GAGTTTCTACTTTGGGTGCATATGCACCTGGATGAACAGTAAAATCGAAA
Protein Sequence ( aa)
>BART1_0-u19873.008 150831_barley_pseudomolecules