- Transcript BART1_0-u19417.007
- Transcript IDBART1_0-u19417.007
- Gene IDBART1_0-u19417
Barley RTD
Exon Structure of BART1_0-u19417.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 156626357 | 156625756 | - |
| chr3H | 2 | 156627286 | 156627225 | - |
| chr3H | 3 | 156628966 | 156627930 | - |
| chr3H | 4 | 156629273 | 156629228 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 6.33964 | 12.2673 | 15.8522 |
| morex | ETI | 47.3078 | 147.298 | 166.347 |
| morex | LEA | 19.5081 | 5.81813 | 12.1391 |
| morex | EPI | 27.6539 | 20.6046 | 28.7246 |
| morex | ROO | 3.5563 | 5.1086 | 0.899849 |
| morex | ROO2 | 4.68466 | 6.23564 | 4.71438 |
| morex | NOD | 11.7365 | 15.8027 | 9.12355 |
| morex | RAC | 17.2173 | 16.3131 | 15.6983 |
| morex | INF1 | 15.504 | 14.3092 | 21.3165 |
| morex | INF2 | 41.1933 | 27.8455 | 31.7547 |
| morex | CAR5 | 13.8657 | 15.6568 | 14.1181 |
| morex | CAR15 | 2.41338 | 0.992082 | 1.26985 |
| morex | LEM | 6.50125 | 2.41858 | 3.08205 |
| morex | LOD | 6.57903 | 0.0265585 | 4.27741 |
| morex | PAL | 4.45502 | 5.29351 | 5.68608 |
| morex | SEN | 7.55234 | 5.38398 | 4.70301 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g14180.2 | +3 | 2e-41 | 150 | 74/90 (82%) | protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g07770.1.p | +3 | 4e-42 | 152 | 72/78 (92%) | pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1747 bp)
>BART1_0-u19417.007 1747 150831_barley_pseudomolecules GCGTTTTGCACTCGGCTTGATCTATTAGGTTCAGGAGCTTCGAGAGGGCTCAGGTGGTGG GATGGCCACCAATCCGCAGCTACCGCAAGAACACGATGGCAACCACCACCAACCAGCTGA AGAGCAGCAAGGAGGATTCTGACGCGAAGCAGGGGCAAGAGTTTCTGTATGTCAAAGTCA GCATGGATGGCGCGCCTTACCTGAGGAAGGTTGACCTCAAGACATACAAGAACTATAAGG ACCTGTCTCTGGGGCTAGAGAAAATGTTCATTGGCTTCAGCACCGGTGAGGCTGCTCGGA TCCTCGGCAAATTGTTGCTGTTTCCATCTGCACCTGAAATTTGATCTGTGGTAGAAGAAA TGCATCATTGCACACATCTCGTTTTGTTGAAGAAATAATCAATTACTCTGTTTGGAAATG TTCTAGCAAATTTCAGGTTTATGAAATTGACGAAGAAGACTCTTTTCAGGGCTGGCGAAA TTGGTTATTGTGGTGACAACCAGTTTGCGATGCCTCGCTTCTAAATTTGTCCAAGCTATT TATGTACAAATTTGTTTTGCTAGATGCCTAGTTTCAACATATATTATTACTGGTGGAGCA AATATTCTCTTCTAATTCAAGGAGCTTTTCTTGTGTTTAATACTGATTGAGCGAGCAACT AACAGTGTAGATTAGACTATGTCATAAACATGCCTAATGTTTAGGCTAGCATTAGCTAAG GGTCTGTAAATATCACTCAATTATTCATAAGCCTTTGATAAACAACAATTTCCCTGAAAT GTCTTCATACCTATTTTGTGCTTCAAGGTCAGACACCAAACCTACTAATTTAAAAACGTA AATTGCAGGAAGGTGTATATTTAGGGACATAAAATTTGTCAACATACCAGTGCTGTGTTA AGAAGTTTAGTGTCAGGTGGCCCTTTCTCCGGCATTTTGTTTATTTGTCCTTACATGTGG CACTGGTTCTAATTTTGTACCAGGTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGA ATACGTGCTGACCTACGAAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATG GGAGATGTTCACCGAGTCTTGCCGAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGG ACTTGCAGTTCCAAGGGCAGGGGATAAGTCCAAGAATAAGAACTAAAGCGGTTGCTGCCC ACAGTTTGAAGACGGGGTCGCACATACCGTCTGTACTACCGCATGGTTTTTCTATCCCGC AAGTAAAATCACTCCGTTACTCTACTGTTGTAAGATTTGTGATGTCTCCTAGAGACTTAT GCTTTATATTTTGTCGTGCCGAAGTTGTTGTACGCATGCTATTTCCATCCGTGTAAATGG TTGGTAAGCAGTGCGAGAGCTACTGCTGTGATTTGATGACTTCTATGTATTTTGCCAGTG TTGTCCTGAACCGGCCGTTCGTCGTAAATGTGAGGGTTGCAAGACAATTATTTACCTGAT GAACTTTGCTTCCGTACACCCTCCTAGAAAAGTTTACAGATTTCGATGTAGGTTAGAAGT TACTGCACTTTAATTATTAAATAGAAAAAAGGGCAACATAGTCTTTCGTATCCAAATCAA TCTATTCGGTATGTTTGATCTGCAGGCTAATATGACGACAGTCTTTTTAAGTAAATTTAG GCTGCGTTTGGATTGAGTGTAAAATAATACAGAGGTATTTTTTTCTACACGTGTAACTTA CCGGCCA
Protein Sequence ( aa)
>BART1_0-u19417.007 150831_barley_pseudomolecules