- Gene BART1_0-u19417
- Gene IDBART1_0-u19417
- Location chr3H: 156625511 - 156629835
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU3Hr1G031460 | 95.1 | - | - | 4111 | 99472 | Partial-Overlap |
Transcripts from Gene BART1_0-u19417
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u19417.001 | 1497 | 1497 bp MSTRG.19417.1 MSTRG.19417 |
BART1_0-u19417.002 | 1849 | 1849 bp MSTRG.19417.2 MSTRG.19417 |
BART1_0-u19417.003 | 1494 | 1494 bp MSTRG.19417.3 MSTRG.19417 |
BART1_0-u19417.004 | 1565 | 1565 bp MSTRG.19417.4 MSTRG.19417 |
BART1_0-u19417.005 | 1583 | 1583 bp MSTRG.19417.5 MSTRG.19417 |
BART1_0-u19417.006 | 1338 | 1338 bp MSTRG.19417.6 MSTRG.19417 |
BART1_0-u19417.007 | 1747 | 1747 bp MSTRG.19417.7 MSTRG.19417 |
BART1_0-u19417.008 | 1893 | 1893 bp MSTRG.19417.8 MSTRG.19417 |
BART1_0-u19417.009 | 1137 | 1137 bp MSTRG.19417.9 MSTRG.19417 |
BART1_0-u19417.010 | 1283 | 1283 bp MSTRG.19417.10 MSTRG.19417 |
BART1_0-u19417.011 | 1753 | 1753 bp MSTRG.19417.11 MSTRG.19417 |
BART1_0-u19417.012 | 1698 | 1698 bp MSTRG.19417.12 MSTRG.19417 |
BART1_0-u19417.013 | 1151 | 1151 bp MSTRG.19417.13 MSTRG.19417 |
BART1_0-u19417.014 | 1273 | 1273 bp MSTRG.19417.14 MSTRG.19417 |
BART1_0-u19417.015 | 1474 | 1474 bp MSTRG.19417.15 MSTRG.19417 |
BART1_0-u19417.016 | 1115 | 1115 bp MSTRG.19417.16 MSTRG.19417 |
BART1_0-u19417.017 | 1525 | 1525 bp MSTRG.19417.17 MSTRG.19417 |
BART1_0-u19417.018 | 340 | 340 bp MSTRG.19417.18 MSTRG.19417 |
Exon Structure of BART1_0-u19417
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g14180.2 | +3 | 2e-56 | 191 | 117/191 (61%) | protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
TAIR PP10 | AT4G29080 @ ARAPORT AT4G29080.1 @ TAIR |
+3 | 8e-35 | 134 | 89/200 (45%) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305 |
BRACH PP3 | Bradi2g07770.1.p | +3 | 1e-76 | 244 | 135/181 (75%) | pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0006351 | transcription, DNA-templated |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0008168 | methyltransferase activity |
GO:1903507 | negative regulation of nucleic acid-templated transcription |
GO:0009734 | auxin-activated signaling pathway |
GO:0003676 | nucleic acid binding |
GO:0005634 | nucleus |
GO:0010629 | negative regulation of gene expression |
GO:0003677 | DNA binding |
GO:0003700 | DNA-binding transcription factor activity |
GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
GO:0005515 | protein binding |
GO:0005737 | cytoplasm |
GO:0016021 | integral component of membrane |
GO:2000113 | negative regulation of cellular macromolecule biosynthetic process |
GO:0032259 | methylation |
GO:0010311 | lateral root formation |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons