Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU3Hr1G03146095.1--411199472Partial-Overlap




Transcripts from Gene BART1_0-u19417

TranscriptLength(bp)Description
BART1_0-u19417.00114971497 bp MSTRG.19417.1 MSTRG.19417
BART1_0-u19417.00218491849 bp MSTRG.19417.2 MSTRG.19417
BART1_0-u19417.00314941494 bp MSTRG.19417.3 MSTRG.19417
BART1_0-u19417.00415651565 bp MSTRG.19417.4 MSTRG.19417
BART1_0-u19417.00515831583 bp MSTRG.19417.5 MSTRG.19417
BART1_0-u19417.00613381338 bp MSTRG.19417.6 MSTRG.19417
BART1_0-u19417.00717471747 bp MSTRG.19417.7 MSTRG.19417
BART1_0-u19417.00818931893 bp MSTRG.19417.8 MSTRG.19417
BART1_0-u19417.00911371137 bp MSTRG.19417.9 MSTRG.19417
BART1_0-u19417.01012831283 bp MSTRG.19417.10 MSTRG.19417
BART1_0-u19417.01117531753 bp MSTRG.19417.11 MSTRG.19417
BART1_0-u19417.01216981698 bp MSTRG.19417.12 MSTRG.19417
BART1_0-u19417.01311511151 bp MSTRG.19417.13 MSTRG.19417
BART1_0-u19417.01412731273 bp MSTRG.19417.14 MSTRG.19417
BART1_0-u19417.01514741474 bp MSTRG.19417.15 MSTRG.19417
BART1_0-u19417.01611151115 bp MSTRG.19417.16 MSTRG.19417
BART1_0-u19417.01715251525 bp MSTRG.19417.17 MSTRG.19417
BART1_0-u19417.018340340 bp MSTRG.19417.18 MSTRG.19417



Exon Structure of BART1_0-u19417


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.2 +3 2e-56 191 117/191 (61%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G29080 @ ARAPORT
AT4G29080.1 @ TAIR
+3 8e-35 134 89/200 (45%) Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
BRACH PP3 Bradi2g07770.1.p +3 1e-76 244 135/181 (75%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0008168methyltransferase activity
GO:1903507negative regulation of nucleic acid-templated transcription
GO:0009734auxin-activated signaling pathway
GO:0003676nucleic acid binding
GO:0005634nucleus
GO:0010629negative regulation of gene expression
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0005515protein binding
GO:0005737cytoplasm
GO:0016021integral component of membrane
GO:2000113negative regulation of cellular macromolecule biosynthetic process
GO:0032259methylation
GO:0010311lateral root formation



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons