- Transcript BART1_0-u19238.014
- Transcript IDBART1_0-u19238.014
- Gene IDBART1_0-u19238
Barley RTD
Exon Structure of BART1_0-u19238.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980186 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980985 | 133980885 | - |
| chr3H | 4 | 133981597 | 133981505 | - |
| chr3H | 5 | 133984488 | 133981692 | - |
| chr3H | 6 | 133984718 | 133984615 | - |
| chr3H | 7 | 133985370 | 133985055 | - |
| chr3H | 8 | 133985937 | 133985769 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.79059 | 12.3844 |
| morex | ETI | 0.000801409 | 2.4246 | 4.77272 |
| morex | LEA | 11.1097 | 0.36311 | 5.92433 |
| morex | EPI | 0 | 1.71023 | 1.17829 |
| morex | ROO | 1.2772 | 1.78752 | 1.65507 |
| morex | ROO2 | 4.45792 | 0.268401 | 3.13367 |
| morex | NOD | 9.01349 | 10.6291 | 7.82579 |
| morex | RAC | 8.11875 | 11.5495 | 11.588 |
| morex | INF1 | 11.3068 | 13.9305 | 7.13298 |
| morex | INF2 | 19.046 | 19.2503 | 12.1054 |
| morex | CAR5 | 3.3021 | 0.0000086638 | 1.62276 |
| morex | CAR15 | 0.132607 | 0.179593 | 2.2134 |
| morex | LEM | 8.15546 | 4.84402 | 7.86516 |
| morex | LOD | 4.02886 | 5.91307 | 1.03287 |
| morex | PAL | 13.1591 | 5.17798 | 4.84416 |
| morex | SEN | 0.570663 | 1.3988 | 1.51116 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +3 | 0.0 | 1038 | 686/1122 (61%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+1 | 2e-35 | 116 | 54/97 (56%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +3 | 0.0 | 1153 | 717/1121 (64%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4056 bp)
>BART1_0-u19238.014 4056 150831_barley_pseudomolecules ACCAGATTTGCGGCAGATATTTTTCATGACCTACACGAGCAAGTTATAACTACATCGTCT AGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTGAAGCAGCACTTCCATCTCTTGAA AAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTGCTTATGTACCAGGTTCTGACTGG CACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGATCTGCCTCGGTTTATG ATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTTCTCGACAAGTAAGGA TGCTTGTTTTTTTTTTTCAAGTGATTTTGGGTCTCTAATGACTTATTTTCAGATTTGATA ATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTTACTTCAAGAAATCAT GGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAAGGAGATCTCATAAAA TCAAGAGGAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACATCCAGGCATA GGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGCAGGCAGTGTG CATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGCAAGAT CCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTG CAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGCCAAGC TGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGA CCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATG CTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAGTTCTG TCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACATATTAAGC CCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTAC TTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGTCCCCT GTGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAGACTGAAG TTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGCACCTC AAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTC CTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTTCCCCA GTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTATACAGATA TACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAATAATGCTG CTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACACCACCCA ATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAG ATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAG AGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGATACCA ATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGG CGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGAAAGGA GTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAG TGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAACCCAAC ACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCGACTAGTT CTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGAACCGT CTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAATAATC AATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGATTCTT CCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTG AGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCACTGACT TGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAA GATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCCTATGT CATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTCTACTC TTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTATGGCG TGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCCACTAG AGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAACCTAG ATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACATTTCAGT TACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGACACCT TTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATATTCAAACT CAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAATGATT CAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCAGATGA ACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAACGGACTCG GCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTCAACAA GTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCACCAGTTG TAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAGACAAA CAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGCCTCAA GTCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACCACCAT TTCCACAAGGAAATGTTAAGGAAGTGAACCATCAGAAAGTTGATGTGATCAAAGAAACGA GTAATCTTCCTAATATATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGA TCTGCACAAGCTGAATGGACATGAAAAGTCCAAAGCAGTATTCAGTGATGTTAACAGTTT GGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGAGCAAGACATTCAACTTAAGACGAAC AAATGGATCTAAGACAAACACCTCATCGCAGTCAACCGAGTCCACTGCCAATTCCAGCGT TGTAGCAATTTTGGAGAAGGCGAATGCAATCCGACAGGCTGTGGCCAGTGACGAGGGGGG TGATGATGATAACTGGAGCGATATCAACTGAGAATGCATATGCCAAACCTTTTCTGTATA TGCAACTAGTACAAGATGAAGAGTGAAAATGTGAATAACACCTTTTTCTTCATTGTAATT AGATATTGCAGCTCTGTTTTTTAACCTTTTTTTAGTTCATGGTAGTGTATCTTAGATCCC TATGGTTGTAGAGATGTTAAATCATTTCAACATCATGTAAATTTATCTTATTATTTATTA ATGGTAGTGAGATGGACTAATAAAATAAGTATGTTAAGCTATCTTTTGTAGCATTGTACT AAAAATTGTCTCTTTGCATTGTTAATAAGATGGGGG
Protein Sequence (1021 aa)
>BART1_0-u19238.014 1021 150831_barley_pseudomolecules MRADKTAHLQKERRSHKIKRKGSRLKEPYHGQATSRHRNGELQRALTAVQLTSSRQCASP SMDGQSFSEHRSTSDARSNPDNISRSSSFSSKARLSFAEQASDTKPSVIPHENGHAKLSN IDMHKLNDASSPVLLSETREDDLGDDLKQGSLSDEMNARSPSVEWHEKAAIVMTTSSVYC DDVVMDRAENAETKHIKPVQREVDYREMQTLEQQGALLQKAKLLLLSSGLNHRDEVPCET DNYMDALNTLESETETEVDSQTKKQGKPVHSFNAHAPQIELTDNAVSQLPDSSPVEFPDT SPNSRMLHTFERSADFPSLSSADAPDISQHSLSGYTDIHPNEWSSVTTIPENNANNAAGD PTEISEPALQAYTPTPPNQRCPRANEIPESKAEVIPRDSPVISKPELSTYAVFPPNKESI VSQIPENSVEGVSEDDTNEITSCLVPEPSISFAPTSEASPAKILPGYNTGNSVISERSPQ DYPGENHQEFGGCGMAEVSNSQTMPLNESSENGSATQHLPTHAPTSSQHLPTHAPTSSVE LSSVKLWTNAGLFGLEPSKPPVGICPGSANQSYPENNQSATRTPDAVYSQTNRPSDSSTY FEHREHSNLNGKQASISELLESEGNAEIGAETYSGTDLVGRNNLPVVSASSFSSIAQRFL ANTLQRRTSPKYNDLPMSSGRVNTDTNGFDEATVNSTLAPKETVFEASQFEKKTDYGVDG LPKSSSCHYSEKSSPPLEHMKISFHPMSASEMSKLNLDFSDGNLHENVDDMMLPTFQLLP GSSVPQPGSGSESEDDTFGRSYSYSSYDDLSPRLYSNSELWDQEDGIGFEDNELYNDSNQ IGSSTTPVSSYMGFEQMNLSGEKSTISLSDIGDNNGLGSLESHPAGELPNFDTLMSTSNH QNRDALIPQNPINLSPVVDQMPPPPPLPPMQWRTMRQTTSLEEERDSTAKDMLENASSLP PVHTPVQEQHLPPCAPPFPQGNVKEVNHQKVDVIKETSNLPNIFEIKSSLLQQIRDKICT S