Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G029210	98.7	-	-	8789	-113	Containing

Transcripts from Gene BART1_0-u19238

Transcript	Length(bp)	Description
BART1_0-u19238.001	5101	5101 bp MSTRG.19238.1 MSTRG.19238
BART1_0-u19238.002	4774	4774 bp MSTRG.19238.2 MSTRG.19238
BART1_0-u19238.003	6735	6735 bp MSTRG.19238.3 MSTRG.19238
BART1_0-u19238.004	4895	4895 bp MSTRG.19238.4 MSTRG.19238
BART1_0-u19238.005	4898	4898 bp MSTRG.19238.5 MSTRG.19238
BART1_0-u19238.006	4946	4946 bp MSTRG.19238.6 MSTRG.19238
BART1_0-u19238.007	4797	4797 bp MSTRG.19238.7 MSTRG.19238
BART1_0-u19238.008	4799	4799 bp MSTRG.19238.8 MSTRG.19238
BART1_0-u19238.009	5184	5184 bp MSTRG.19238.9 MSTRG.19238
BART1_0-u19238.010	4557	4557 bp MSTRG.19238.10 MSTRG.19238
BART1_0-u19238.011	3784	3784 bp MSTRG.19238.11 MSTRG.19238
BART1_0-u19238.012	4225	4225 bp MSTRG.19238.12 MSTRG.19238
BART1_0-u19238.013	4386	4386 bp MSTRG.19238.13 MSTRG.19238
BART1_0-u19238.014	4056	4056 bp MSTRG.19238.14 MSTRG.19238

Exon Structure of BART1_0-u19238

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g11040.1	+2	0.0	1112	732/1187 (62%)	protein|SCAR-like protein 2, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi2g06610.2.p	+2	0.0	1253	773/1196 (65%)	pacid=32774244 transcript=Bradi2g06610.2 locus=Bradi2g06610 ID=Bradi2g06610.2.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons