- Transcript BART1_0-u19238.013
- Transcript IDBART1_0-u19238.013
- Gene IDBART1_0-u19238
Barley RTD
Exon Structure of BART1_0-u19238.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980186 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133981597 | 133981347 | - |
| chr3H | 5 | 133984485 | 133981692 | - |
| chr3H | 6 | 133985374 | 133984615 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.831742 | 0.772851 | 3.2393 |
| morex | ETI | 1.19374 | 1.09244 | 0.431794 |
| morex | LEA | 1.14795 | 0.532574 | 2.16548 |
| morex | EPI | 0.162075 | 0.2055 | 0.810334 |
| morex | ROO | 0 | 0.193347 | 0 |
| morex | ROO2 | 0.412312 | 0.439919 | 0.32617 |
| morex | NOD | 3.07378 | 1.66738 | 4.49834 |
| morex | RAC | 3.79976 | 6.25085 | 4.20091 |
| morex | INF1 | 3.6214 | 3.07606 | 4.32487 |
| morex | INF2 | 5.17114 | 2.42926 | 3.85183 |
| morex | CAR5 | 2.27078 | 1.14067 | 2.62441 |
| morex | CAR15 | 0.730917 | 0.16745 | 0.898683 |
| morex | LEM | 2.33989 | 2.33325 | 0.754275 |
| morex | LOD | 0.894744 | 1.06181 | 0.133695 |
| morex | PAL | 1.89059 | 2.49245 | 0.889232 |
| morex | SEN | 0.364605 | 0.405553 | 0.512194 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +3 | 0.0 | 967 | 656/1087 (60%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g06610.2.p | +3 | 0.0 | 1066 | 680/1087 (63%) | pacid=32774244 transcript=Bradi2g06610.2 locus=Bradi2g06610 ID=Bradi2g06610.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4386 bp)
>BART1_0-u19238.013 4386 150831_barley_pseudomolecules GCAGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGAT CTGCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTT CTCGACAAGTAAGGATGCTTGTTTTTTTTTTTCAAGTGATTTTGGGTCTCTAATGACTTA TTTTCAGATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTT ACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAA GGAGATCTCATAAAATCAAGGTTCTATTTCTCGTTTTCTGCGTCCGGAGATCAATGTCTA TGCTTAGCTATTTTAGTCAACACACAGGCACAACCAACTTAAAATCAATTTAGTTGTGGT GTTACTGCTCCCGTCTACTCGTATGAGCATGACAACCATTATGTACTAATCTGAAATTAA TTATTACGGAACACTATTATTTAAGCCACGTCAAGTCTTTATTGCTAAATGCATTGCTGA GCTACCGTGCTTCATTATTGGATGGCTGTGGCTTATTGCTGTTAGTTTGGCCGATGCAAT TTTTTTTTCTTCTTGTTGGTAACTTTATGCTGAAAGACTTGATTGAACTTGGACAGAGGA AAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACATCCAGGCATAGGAATGGTG AATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGGCAGTGTGCATCTCCCAGCA TGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGCAAGATCCAACCCTGACA ATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTGCAGAACAAGCTT CAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGCCAAGCTGTCAAATATTG ATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGACCAGGGAAGATG ATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATGCTAGGTCACCTT CTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAGTTCTGTCTACTGTGATG ATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACATATTAAGCCCGTGCAGCGAG AAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAA AGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGTCCCCTGTGAAACAGACA ACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAGACTGAAGTTGACTCTCAAA CTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGCACCTCAAATAGAGTTGA CAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTCCTGATACAAGTC CAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTG CAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTATACAGATATACATCCTAATG AATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAATAATGCTGCTGGAGACCCCA CTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACACCACCCAATCAAAGGTGCC CTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAGATTCTCCTGTGA TCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAGAGTCTATTGTCA GTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGATACCAATGAAATCACTA GTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAA AAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGAAAGGAGTCCTCAGGATT ATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAGTGTCTAATTCAC AGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAACCCAACACCTTCCCACAC ATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCGACTAGTTCTGTAGAATTAT CTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGAACCGTCTAAACCTCCAG TTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAATAATCAATCAGCCACAA GAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGATTCTTCCACATATTTCG AGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTGAGCTCCTAGAAT CTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCACTGACTTGGTTGGAAGGA ATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAAGATTCCTTGCCA ATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCCTATGTCATCTGGGAGAG TGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTCTACTCTTGCACCAAAGG AAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTATGGCGTGGATGGACTGC CCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCCACTAGAGCATATGAAAA TATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAACCTAGATTTTTCTGATG GCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACATTTCAGTTACTTCCAGGGT CTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGACACCTTTGGTAGATCTT ATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATATTCAAACTCAGAGTTGTGGG ATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAATGATTCAAATCAAATAG GATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCAGATGAACTTATCTGGTG AGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAACGGACTCGGCTCGTTAGAAT CCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTCAACAAGTAATCATCAAA ATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCACCAGTTGTAGATCAGATGC CGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAGACAAACAACTTCCCTAG AAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGCCTCAAGTCTACCACCTG TACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACCACCATTTCCACAAGGAA ATGTTAAGGAAGTGAACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTA ATATATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGGTTTGTTTTATTT TAATTTTATTTTTAAGGAAATGTTATTTATCATCTATGCTCTCACTCTGGCTACTTTCCA CCAATGAGTTCAAAAGGAAAAAGTGCAAGTGAAGAACCCACTTCCTCTTCCCCAGTCTGA AAGTTCGTTTTTGGATAATTATTTGCCAGATCTGCACAAGCTGAATGGACATGAAAAGTC CAAAGCAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAAT CAGGAGCAAGACATTCAACTTAAGACGAACAAATGGATCTAAGACAAACACCTCATCGCA GTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGCGAATGCAAT CCGACAGGCTGTGGCCAGTGACGAGGGGGGTGATGATGATAACTGGAGCGATATCAACTG AGAATGCATATGCCAAACCTTTTCTGTATATGCAACTAGTACAAGATGAAGAGTGAAAAT GTGAATAACACCTTTTTCTTCATTGTAATTAGATATTGCAGCTCTGTTTTTTAACCTTTT TTTAGTTCATGGTAGTGTATCTTAGATCCCTATGGTTGTAGAGATGTTAAATCATTTCAA CATCATGTAAATTTATCTTATTATTTATTAATGGTAGTGAGATGGACTAATAAAATAAGT ATGTTAAGCTATCTTTTGTAGCATTGTACTAAAAATTGTCTCTTTGCATTGTTAATAAGA TGGGGG
Protein Sequence (1052 aa)
>BART1_0-u19238.013 1052 150831_barley_pseudomolecules MQFFFLLVGNFMLKDLIELGQRKGSRLKEPYHGQATSRHRNGELQRALTAVQLTSRQCAS PSMDGQSFSEHRSTSDARSNPDNISRSSSFSSKARLSFAEQASDTKPSVIPHENGHAKLS NIDMHKLNDASSPVLLSETREDDLGDDLKQGSLSDEMNARSPSVEWHEKAAIVMTTSSVY CDDVVMDRAENAETKHIKPVQREVDYREMQTLEQQGALLQKAKLLLLSSGLNHRDEVPCE TDNYMDALNTLESETETEVDSQTKKQGKPVHSFNAHAPQIELTDNAVSQLPDSSPVEFPD TSPNSRMLHTFERSADFPSLSSADAPDISQHSLSGYTDIHPNEWSSVTTIPENNANNAAG DPTEISEPALQAYTPTPPNQRCPRANEIPESKAEVIPRDSPVISKPELSTYAVFPPNKES IVSQIPENSVEGVSEDDTNEITSCLVPEPSISFAPTSEASPAKILPGYNTGNSVISERSP QDYPGENHQEFGGCGMAEVSNSQTMPLNESSENGSATQHLPTHAPTSSQHLPTHAPTSSV ELSSVKLWTNAGLFGLEPSKPPVGICPGSANQSYPENNQSATRTPDAVYSQTNRPSDSST YFEHREHSNLNGKQASISELLESEGNAEIGAETYSGTDLVGRNNLPVVSASSFSSIAQRF LANTLQRRTSPKYNDLPMSSGRVNTDTNGFDEATVNSTLAPKETVFEASQFEKKTDYGVD GLPKSSSCHYSEKSSPPLEHMKISFHPMSASEMSKLNLDFSDGNLHENVDDMMLPTFQLL PGSSVPQPGSGSESEDDTFGRSYSYSSYDDLSPRLYSNSELWDQEDGIGFEDNELYNDSN QIGSSTTPVSSYMGFEQMNLSGEKSTISLSDIGDNNGLGSLESHPAGELPNFDTLMSTSN HQNRDALIPQNPINLSPVVDQMPPPPPLPPMQWRTMRQTTSLEEERDSTAKDMLENASSL PPVHTPVQEQHLPPCAPPFPQGNVKEVNHQKVDVIKETSNLPNIFEIKSSLLQQIRDKVC FILILFLRKCYLSSMLSLWLLSTNEFKRKKCK