- Transcript BART1_0-u19238.012
- Transcript IDBART1_0-u19238.012
- Gene IDBART1_0-u19238
Barley RTD
Exon Structure of BART1_0-u19238.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980176 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133981597 | 133981505 | - |
| chr3H | 5 | 133984488 | 133981692 | - |
| chr3H | 6 | 133984718 | 133984615 | - |
| chr3H | 7 | 133985153 | 133985055 | - |
| chr3H | 8 | 133985370 | 133985247 | - |
| chr3H | 9 | 133985932 | 133985769 | - |
| chr3H | 10 | 133986404 | 133986152 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.17573 | 3.19045 | 1.33427 |
| morex | ETI | 1.99068 | 0.699533 | 0.00000000674915 |
| morex | LEA | 0.591463 | 2.17753 | 3.72702 |
| morex | EPI | 0.945612 | 0.0169137 | 2.51322 |
| morex | ROO | 1.24507 | 2.5536 | 0.00000647778 |
| morex | ROO2 | 3.64706 | 1.21695 | 0.0000765323 |
| morex | NOD | 5.22323 | 1.92557 | 35.3255 |
| morex | RAC | 1.16617 | 3.84569 | 4.04949 |
| morex | INF1 | 3.20989 | 7.30591 | 5.11572 |
| morex | INF2 | 5.04778 | 7.75826 | 9.64561 |
| morex | CAR5 | 0.393168 | 4.3052 | 1.61224 |
| morex | CAR15 | 2.35886 | 0.834421 | 0.887037 |
| morex | LEM | 1.63531 | 3.99098 | 3.56687 |
| morex | LOD | 1.09164 | 0.00744462 | 0.0000000852229 |
| morex | PAL | 1.32008 | 3.71776 | 1.66091 |
| morex | SEN | 0.836912 | 2.70428 | 1.18646 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +2 | 0.0 | 1107 | 732/1188 (62%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g06610.1.p | +2 | 0.0 | 1259 | 779/1196 (65%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4225 bp)
>BART1_0-u19238.012 4225 150831_barley_pseudomolecules TCGATGGCGAGGGCCGCGACCGACGGCGAGGGGGCTGCGACCAGTGATGACTGGCGGTGA GAGAAGATGAGGAGGCGAGGCGTGGGGTGCAGCGTGTGCGGGGGCGGCACCCTCCTTTTT CTCTCTTTCTTCCGTGTGGGAGGTTGAAGATGGGATGCGGAAGAGGAGGGGGGAGATCTG ACGGCTACACGCGTGCAAATCGGACTGATCCGGGCTGACCGGCCGAAACATTGGGCCGGC GCGCCGACGCAGAATTTGCGGCAGATATTTTTCATGACCTACACGAGCAAGTTATAACTA CATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTGAAGCAGCACTTCCAT CTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTGCTTATGTACCAGGTT CTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGATCTGCCTC GGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTTCTCGACA AAGATATTCTGATCCATCTTACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGAC TGCACATCTCCAAAAAGAAAGGAGATCTCATAAAATCAAGAGGAAAGGATCACGCCTAAA AGAACCATATCATGGACAAGCCACATCCAGGCATAGGAATGGTGAATTGCAGCGAGCACT CACTGCTGTTCAACTCACCAGCAGCAGGCAGTGTGCATCTCCCAGCATGGATGGCCAGAG TTTTTCGGAGCATAGATCTACATCTGATGCAAGATCCAACCCTGACAATATAAGCAGATC TTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTGCAGAACAAGCTTCAGATACAAAGCC TTCTGTAATTCCTCATGAGAATGGTCATGCCAAGCTGTCAAATATTGATATGCACAAGCT TAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGACCAGGGAAGATGATCTGGGTGATGA TTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATGCTAGGTCACCTTCTGTTGAATGGCA TGAAAAGGCTGCAATTGTCATGACTACAAGTTCTGTCTACTGTGATGATGTTGTCATGGA TAGGGCTGAAAATGCAGAAACTAAACATATTAAGCCCGTGCAGCGAGAAGTTGATTATAG GGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAAAGTTGTTATTACT GTCATCAGGCTTAAACCACCGTGATGAAGTCCCCTGTGAAACAGACAACTACATGGATGC ACTTAACACACTTGAATCTGAGACAGAGACTGAAGTTGACTCTCAAACTAAAAAACAAGG GAAGCCAGTACATTCCTTCAATGCTCATGCACCTCAAATAGAGTTGACAGATAATGCCGT TTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTCCTGATACAAGTCCAAATTCCAGAAT GTTACATACTTTTGAAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTGCAGATGCTCCGGA TATTTCACAGCATTCATTGTCAGGTTATACAGATATACATCCTAATGAATGGTCATCTGT TACCACCATCCCTGAGAATAATGCAAATAATGCTGCTGGAGACCCCACTGAAATTTCAGA ACCGGCACTGCAAGCATATACACCTACACCACCCAATCAAAGGTGCCCTCGTGCAAATGA GATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAGATTCTCCTGTGATCTCAAAACCAGA GCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAGAGTCTATTGTCAGTCAGATCCCTGA GAATAGTGTAGAAGGTGTGTCAGAAGATGATACCAATGAAATCACTAGTTGTCTTGTACC GGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAAAAATCTTACCTGG TTATAACACTGGTAACTCTGTAATTTCGGAAAGGAGTCCTCAGGATTATCCTGGAGAAAA TCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAGTGTCTAATTCACAGACCATGCCTTT GAACGAGTCATCAGAGAATGGATCTGCAACCCAACACCTTCCCACACATGCTCCTACTAG TTCCCAACACCTTCCCACACATGCTCCGACTAGTTCTGTAGAATTATCTTCTGTTAAGCT CTGGACAAATGCTGGTCTCTTCGGACTTGAACCGTCTAAACCTCCAGTTGGCATATGTCC AGGTTCTGCAAACCAAAGCTACCCAGAGAATAATCAATCAGCCACAAGAACACCTGATGC AGTTTATAGCCAAACAAACCGGCCCTCAGATTCTTCCACATATTTCGAGCACAGGGAGCA CAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTGAGCTCCTAGAATCTGAAGGTAATGC TGAAATTGGTGCTGAAACATACTCTGGCACTGACTTGGTTGGAAGGAATAACTTGCCCGT GGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAAGATTCCTTGCCAATACACTTCAGAG AAGAACTTCTCCCAAATATAATGATCTTCCTATGTCATCTGGGAGAGTGAATACTGACAC AAATGGGTTTGATGAAGCTACTGTAAATTCTACTCTTGCACCAAAGGAAACAGTATTCGA GGCATCTCAGTTTGAGAAGAAAACAGATTATGGCGTGGATGGACTGCCCAAGTCCTCTAG TTGCCATTACTCTGAGAAATCATCTCCGCCACTAGAGCATATGAAAATATCCTTTCACCC CATGAGTGCATCTGAAATGTCGAAATTGAACCTAGATTTTTCTGATGGCAATCTTCATGA AAATGTTGATGATATGATGTTACCAACATTTCAGTTACTTCCAGGGTCTTCTGTCCCACA GCCTGGCAGTGGTTCTGAATCAGAAGATGACACCTTTGGTAGATCTTATAGTTATTCTTC ATATGATGATCTAAGTCCGCGTTTATATTCAAACTCAGAGTTGTGGGATCAAGAAGATGG AATTGGATTCGAGGATAATGAGCTGTATAATGATTCAAATCAAATAGGATCCTCCACAAC GCCTGTCTCTAGCTATATGGGATTCGAGCAGATGAACTTATCTGGTGAGAAGTCCACTAT TTCACTTTCAGATATTGGAGATAATAACGGACTCGGCTCGTTAGAATCCCATCCTGCTGG AGAACTTCCGAACTTTGACACTTTGATGTCAACAAGTAATCATCAAAATAGAGATGCGCT CATTCCACAAAATCCAATCAATTTATCACCAGTTGTAGATCAGATGCCGCCGCCACCTCC TCTTCCCCCAATGCAGTGGAGGACAATGAGACAAACAACTTCCCTAGAAGAAGAAAGAGA CTCTACGGCTAAAGACATGCTTGAGAATGCCTCAAGTCTACCACCTGTACACACTCCTGT GCAGGAACAACATCTTCCACCGTGTGCACCACCATTTCCACAAGGAAATGTTAAGGAAGT GAACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATATTTGAGAT CAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGCCAGATCTGCACAAGCTGAATGGACA TGAAAAGTCCAAAGCAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGGGGGAGTTGCT TCAGCAAATCAGGAGCAAGACATTCAACTTAAGACGAACAAATGGATCTAAGACAAACAC CTCATCGCAGTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGC GAATGCAATCCGACAGGCTGTGGCCAGTGACGAGGGGGGTGATGATGATAACTGGAGCGA TATCAACTGAGAATGCATATGCCAAACCTTTTCTGTATATGCAACTAGTACAAGATGAAG AGTGAAAATGTGAATAACACCTTTTTCTTCATTGTAATTAGATATTGCAGCTCTGTTTTT TAACCTTTTTTTAGTTCATGGTAGTGTATCTTAGATCCCTATGGTTGTAGAGATGTTAAA TCATTTCAACATCATGTAAATTTATCTTATTATTTATTAATGGTAGTGAGATGGACTAAT AAAATAAGTATGTTAAGCTATCTTTTGTAGCATTGTACTAAAAATTGTCTCTTTGCATTG TTAATAAGATGGGGGCATACTGATA
Protein Sequence (1134 aa)
>BART1_0-u19238.012 1134 150831_barley_pseudomolecules MSRPTTTLPSRQRYSDPSYFKKSWDVMRADKTAHLQKERRSHKIKRKGSRLKEPYHGQAT SRHRNGELQRALTAVQLTSSRQCASPSMDGQSFSEHRSTSDARSNPDNISRSSSFSSKAR LSFAEQASDTKPSVIPHENGHAKLSNIDMHKLNDASSPVLLSETREDDLGDDLKQGSLSD EMNARSPSVEWHEKAAIVMTTSSVYCDDVVMDRAENAETKHIKPVQREVDYREMQTLEQQ GALLQKAKLLLLSSGLNHRDEVPCETDNYMDALNTLESETETEVDSQTKKQGKPVHSFNA HAPQIELTDNAVSQLPDSSPVEFPDTSPNSRMLHTFERSADFPSLSSADAPDISQHSLSG YTDIHPNEWSSVTTIPENNANNAAGDPTEISEPALQAYTPTPPNQRCPRANEIPESKAEV IPRDSPVISKPELSTYAVFPPNKESIVSQIPENSVEGVSEDDTNEITSCLVPEPSISFAP TSEASPAKILPGYNTGNSVISERSPQDYPGENHQEFGGCGMAEVSNSQTMPLNESSENGS ATQHLPTHAPTSSQHLPTHAPTSSVELSSVKLWTNAGLFGLEPSKPPVGICPGSANQSYP ENNQSATRTPDAVYSQTNRPSDSSTYFEHREHSNLNGKQASISELLESEGNAEIGAETYS GTDLVGRNNLPVVSASSFSSIAQRFLANTLQRRTSPKYNDLPMSSGRVNTDTNGFDEATV NSTLAPKETVFEASQFEKKTDYGVDGLPKSSSCHYSEKSSPPLEHMKISFHPMSASEMSK LNLDFSDGNLHENVDDMMLPTFQLLPGSSVPQPGSGSESEDDTFGRSYSYSSYDDLSPRL YSNSELWDQEDGIGFEDNELYNDSNQIGSSTTPVSSYMGFEQMNLSGEKSTISLSDIGDN NGLGSLESHPAGELPNFDTLMSTSNHQNRDALIPQNPINLSPVVDQMPPPPPLPPMQWRT MRQTTSLEEERDSTAKDMLENASSLPPVHTPVQEQHLPPCAPPFPQGNVKEVNHQKVDVI KETSNLPNIFEIKSSLLQQIRDKPDLHKLNGHEKSKAVFSDVNSLDERGELLQQIRSKTF NLRRTNGSKTNTSSQSTESTANSSVVAILEKANAIRQAVASDEGGDDDNWSDIN