- Transcript BART1_0-u19238.011
- Transcript IDBART1_0-u19238.011
- Gene IDBART1_0-u19238
Barley RTD
Exon Structure of BART1_0-u19238.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980176 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133981415 | 133981347 | - |
| chr3H | 5 | 133981597 | 133981505 | - |
| chr3H | 6 | 133984488 | 133981692 | - |
| chr3H | 7 | 133984718 | 133984615 | - |
| chr3H | 8 | 133985184 | 133985055 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.56404 | 0 | 0.000000162355 |
| morex | ETI | 0.733026 | 1.19779 | 0.238468 |
| morex | LEA | 0 | 0 | 0.738334 |
| morex | EPI | 2.39901 | 2.91657 | 0.114314 |
| morex | ROO | 0.288709 | 0.000000183797 | 0 |
| morex | ROO2 | 0.0259061 | 3.2358 | 2.61984 |
| morex | NOD | 0.0110603 | 6.88147 | 7.0058 |
| morex | RAC | 6.25319 | 0.000000995828 | 2.39268 |
| morex | INF1 | 0 | 0 | 0.0167303 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.18504 | 1.71347 | 1.27791 |
| morex | LOD | 2.93309 | 0.000174287 | 0.0000337747 |
| morex | PAL | 3.78383 | 3.76115 | 2.34757 |
| morex | SEN | 0.0000012366 | 0 | 0.183745 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +2 | 0.0 | 1113 | 741/1220 (61%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g06610.2.p | +2 | 0.0 | 1255 | 782/1229 (64%) | pacid=32774244 transcript=Bradi2g06610.2 locus=Bradi2g06610 ID=Bradi2g06610.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3784 bp)
>BART1_0-u19238.011 3784 150831_barley_pseudomolecules TGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTTACTTCAAGAA ATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAAGGAGATCTCA TAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACATCCAG GCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGCAGGCA GTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGC AAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAG TTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGC CAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAG CGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGAT GAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAG TTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACATAT TAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGC CTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGT CCCCTGTGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAGAC TGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGC ACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGA GTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTT CCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTATAC AGATATACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAATAA TGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACACC ACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCC CAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAA TAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGA TACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAG TGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGA AAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGC TGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAAC CCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCGAC TAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGA ACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAA TAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGA TTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAAT AAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCAC TGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGC ACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCC TATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTC TACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTA TGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCC ACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAA CCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACATT TCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGA CACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATATTC AAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAA TGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCA GATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAACGG ACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTC AACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCACC AGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAG ACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGC CTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACC ACCATTTCCACAAGGAAATGTTAAGGAAGTGAACCATCAGAAAGTTGATGTGATCAAAGA AACGAGTAATCTTCCTAATATATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGA TAAGGAAAAAGTGCAAGTGAAGAACCCACTTCCTCTTCCCCAGTCTGAAAGTTCGTTTTT GGATAATTATTTGCCAGATCTGCACAAGCTGAATGGACATGAAAAGTCCAAAGCAGTATT CAGTGATGTTAACAGTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGAGCAAGAC ATTCAACTTAAGACGAACAAATGGATCTAAGACAAACACCTCATCGCAGTCAACCGAGTC CACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGCGAATGCAATCCGACAGGCTGT GGCCAGTGACGAGGGGGGTGATGATGATAACTGGAGCGATATCAACTGAGAATGCATATG CCAAACCTTTTCTGTATATGCAACTAGTACAAGATGAAGAGTGAAAATGTGAATAACACC TTTTTCTTCATTGTAATTAGATATTGCAGCTCTGTTTTTTAACCTTTTTTTAGTTCATGG TAGTGTATCTTAGATCCCTATGGTTGTAGAGATGTTAAATCATTTCAACATCATGTAAAT TTATCTTATTATTTATTAATGGTAGTGAGATGGACTAATAAAATAAGTATGTTAAGCTAT CTTTTGTAGCATTGTACTAAAAATTGTCTCTTTGCATTGTTAATAAGATGGGGGCATACT GATA
Protein Sequence (1155 aa)
>BART1_0-u19238.011 1155 150831_barley_pseudomolecules DNAGAGACLKRYSDPSYFKKSWDVMRADKTAHLQKERRSHKIKRKGSRLKEPYHGQATSR HRNGELQRALTAVQLTSSRQCASPSMDGQSFSEHRSTSDARSNPDNISRSSSFSSKARLS FAEQASDTKPSVIPHENGHAKLSNIDMHKLNDASSPVLLSETREDDLGDDLKQGSLSDEM NARSPSVEWHEKAAIVMTTSSVYCDDVVMDRAENAETKHIKPVQREVDYREMQTLEQQGA LLQKAKLLLLSSGLNHRDEVPCETDNYMDALNTLESETETEVDSQTKKQGKPVHSFNAHA PQIELTDNAVSQLPDSSPVEFPDTSPNSRMLHTFERSADFPSLSSADAPDISQHSLSGYT DIHPNEWSSVTTIPENNANNAAGDPTEISEPALQAYTPTPPNQRCPRANEIPESKAEVIP RDSPVISKPELSTYAVFPPNKESIVSQIPENSVEGVSEDDTNEITSCLVPEPSISFAPTS EASPAKILPGYNTGNSVISERSPQDYPGENHQEFGGCGMAEVSNSQTMPLNESSENGSAT QHLPTHAPTSSQHLPTHAPTSSVELSSVKLWTNAGLFGLEPSKPPVGICPGSANQSYPEN NQSATRTPDAVYSQTNRPSDSSTYFEHREHSNLNGKQASISELLESEGNAEIGAETYSGT DLVGRNNLPVVSASSFSSIAQRFLANTLQRRTSPKYNDLPMSSGRVNTDTNGFDEATVNS TLAPKETVFEASQFEKKTDYGVDGLPKSSSCHYSEKSSPPLEHMKISFHPMSASEMSKLN LDFSDGNLHENVDDMMLPTFQLLPGSSVPQPGSGSESEDDTFGRSYSYSSYDDLSPRLYS NSELWDQEDGIGFEDNELYNDSNQIGSSTTPVSSYMGFEQMNLSGEKSTISLSDIGDNNG LGSLESHPAGELPNFDTLMSTSNHQNRDALIPQNPINLSPVVDQMPPPPPLPPMQWRTMR QTTSLEEERDSTAKDMLENASSLPPVHTPVQEQHLPPCAPPFPQGNVKEVNHQKVDVIKE TSNLPNIFEIKSSLLQQIRDKEKVQVKNPLPLPQSESSFLDNYLPDLHKLNGHEKSKAVF SDVNSLDERGELLQQIRSKTFNLRRTNGSKTNTSSQSTESTANSSVVAILEKANAIRQAV ASDEGGDDDNWSDIN