- Transcript BART1_0-u18690.011
- Transcript IDBART1_0-u18690.011
- Gene IDBART1_0-u18690
Barley RTD
Exon Structure of BART1_0-u18690.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 67423171 | 67421731 | - |
| chr3H | 2 | 67425398 | 67425189 | - |
| chr3H | 3 | 67425680 | 67425530 | - |
| chr3H | 4 | 67426259 | 67425751 | - |
| chr3H | 5 | 67426946 | 67426694 | - |
| chr3H | 6 | 67427189 | 67427047 | - |
| chr3H | 7 | 67427332 | 67427278 | - |
| chr3H | 8 | 67427717 | 67427429 | - |
| chr3H | 9 | 67427994 | 67427863 | - |
| chr3H | 10 | 67429944 | 67429767 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.18068 | 4.58367 | 0 |
| morex | ETI | 0.141749 | 0 | 0 |
| morex | LEA | 0.758015 | 0.49376 | 0 |
| morex | EPI | 0.19589 | 0 | 0.371874 |
| morex | ROO | 0 | 1.41449 | 0 |
| morex | ROO2 | 0.262591 | 0.162502 | 0.302922 |
| morex | NOD | 0.000000150286 | 0 | 0.498016 |
| morex | RAC | 0.160504 | 0.430668 | 0.140026 |
| morex | INF1 | 0.0924012 | 2.03572 | 0.0000000342473 |
| morex | INF2 | 0.697387 | 0.289489 | 0.40153 |
| morex | CAR5 | 0 | 0.729261 | 0 |
| morex | CAR15 | 0 | 0 | 0.343268 |
| morex | LEM | 0 | 0 | 0.164869 |
| morex | LOD | 0 | 0.0942876 | 0 |
| morex | PAL | 0.165325 | 0.172008 | 0.408714 |
| morex | SEN | 0.424882 | 0.145256 | 0.441368 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g08700.6 | +1 | 0.0 | 1149 | 610/686 (89%) | protein|GIGANTEA, putative, expressed |
| TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+1 | 0.0 | 835 | 473/702 (67%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
| BRACH PP3 | Bradi2g05226.1.p | +1 | 0.0 | 1196 | 636/686 (93%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3361 bp)
>BART1_0-u18690.011 3361 150831_barley_pseudomolecules CCCCTCCCATTACGGAAAAAATCTTTTTCTCGCCTCTCCTCGCCCCTCACATTTTTCTCT CTCCTCCTCCTCCTCCTCTCTGCCTTCGCCTCTGCCTCAGCCTCGCCCGCCGCGCAATCC CGTCGCCGGCGCCGCCGATTCGCCGCCCGAGCTCCGTATTGGGGCGCTCCCGACCGAGAG ACGTTAAGCGCCTATGGTTGGAACTGGTTGATATGATATCTGGTCACATTGTGGGATGCA ATCCCCCCTTAGTGGGGGGTGATTGAAGAAGTCAACAATAGGAGAACTTGCATCTTGCTG AAGTTTTCTGTTTCTTGAGCAGGCTCTTAAACTACCAAGTATGTCAGCGTCAAATGGGAA GTGGATTGATGGACTCCAGTTCTCATCACTGTTCTGGCCCCCGCCACACGATGCGCAGCA GAAACAGGTACAATGCTCATAGTTTAGCTATGTCATATACGCTATAACTTTGTAAACACC TGATGTTAATGCGACACTTATGTTTTCTTTTCTTTTTGAAGGCACAAATTTTAGCCTATG TTGAGTACTTTGGTCAGTTCACATCTGACAGCGAGCAATTCCCGGAGGATGTAGCTCAGC TAATTCAAACTTGCTATCCATCAAAAGAAAAGCGGTTGGTAGATGAAGTATTAGCAACTT TTGTTCTCCATCACCCCGAGCATGGTCATGCAGTTGTACATCCAATTCTTTCACGCATCA TAGACGGGACACTGAGTTATGATAGTCATGGTTCCCCATTCAATTCCTTCATCTCCTTAT TTACCCAAAGTTCTGAGAGTACTCAGAGCAGTGGGCCTTGGCCTGTGGAGAGATTCTTAG AGTTCTAACTCACTACAACAGGCCAATCTTTAAAGTTGCAGACTGTAACAACACCTCTGA CCAGGCTACAACAAGTTGTTCTGCACAGGAGAAAGCTAATTACTCTCCAGGAAATGAACC TGAACGGAAGCCATTGAGGCCATTATCTCCTTGGATCACAGATATTTTGCTAACTGCACC TTTAGGCATTAGAAGCGACTATTTTAGATGGTGTGGTGGAGTTATGGGAAAATACGCAGC TGGTGGAGAATTGAAGCCTCCAACAACTGGTTAGTAATTTTGAAATCAACTTTTGTGCCT GAAATGAGAAGATGCAGTAACACTAGATGTTTTCTTTGTTCCATCGAGATTTTATGTCTT TGTTGCTTCTTATTTTTATTATGCGGGTTTTCCAAGTGTGGAACACCTTTTTTTCTTGCA ACAGATGCTAATTCTTGCCATAAACAAAAATGATTAATTATACGTCCTTTTAATTTAGCT TACAGCCGAGGAGCTGGTAAGCACCCACAACTCATGCCATCCACCCCAAGATGGGCTGTT GCCAATGGAGCTGGAGTTATTTTAAGTGTCTGTGATGAGGAAGTAGCTCGTTATGAGACA GCAAACTTAACCGCGGCAGCTGTTCCCGCCCTTCTGCTACCTCCACCGACAACACCCTTG GATGAGCATTTGGTGGCAGGGCTACCCCCTCTTGAGCCATACGCTCGCTTGTTTCATAGA TACTATGCAATTGCCACACCAAGTGCTACACAAAGATTGCTTTTTGGTCTTCTTGAAGCA CCACCATCATGGGCTCCAGATGCACTTGATGCAGCAGTTCAGCTTGTTGAACTCCTTCGG GCAGCTGAAGATTATGCTACTGGCATGCGGCTTCCAAAAAATTGGTTGCATCTTCATTTC TTGCGTGCGATTGGAACTGCAATGTCTATGAGGGCTGGTATTGCTGCCGATACAGCTGCT GCGTTGCTTTTTCGCATACTATCCCAACCAACGTTGCTTTTTCCTCCACTAAGGCATGCT GAAGGAGTTGAAGTGCAACATGAACCACTGGGTGGCTATGTATCATCATACAAAAGACAG CTGGAAGTTCCTGCATCTGAAACCACAATTGATGCCACTGCACAAGGCATTGCTTCCTTG CTGTGTGCTCATGGTCCTGATGTTGAGTGGAGAATATGTACCATCTGGGAAGCTGCCTAT GGTTTGTTACCTCTGAATTCATCAGCAGTTGATTTGCCCGAAATCGTTGTAGCTGCTCCG CTTCAGCCACCTACTTTGTCATGGAGCCTATACTTGCCACTGTTGAAAGTATTCGAGTAT CTACCTCGTGGAAGTCCATCTGAAGCATGCCTTATGAGAATATTTGTGGCAACAGTTGAA GCTATACTCAGAAGAACTTTCCCTTCGGAAACCTCTGAATCATCTAAAAGACCAAGAAGT CAATCCAAGAACCTTGCTGTTGCTGAACTCCGTACAATGATACATTCACTCTTTGTTGAA TCATGTGCTTCAATGAACCTTGCTTCCCGGTTGTTGTTTGTTGTATTAACTGTTTGCGTC AGTCATCAAGCTTTGCCAGGGGGCAGCAAAAGACCAACGGGTAGTGAAAACCATTCTTCT GAGGAGGCCACTGAGGACCCAAGATTAACCAATGGAAGAAATAAGGTCAAGAAGAAACAA GGGCCTGTTGGTACATTTGACTCGTATGTGCTGGCTGCTGTTTGTGCCTTATCTTGTGAG CTTCAGCTGTTCCCTATCCTTTGCAAGAGTGCAACAAACTCAAAAGTAAAAGACTCTATA AAGATCCTGAAGCCTGGAAAAAACAATGGGATCAGTAATGAGCTACAGAATAGCATTAGC TCAGCAATTCTCCATACTCGTAGAATTCTTGGCATCCTGGAAGCTCTTTTCTCCTTGAAG CCATCATCAGTTGGTACCTCCTGGAACTATAGTTCAAATGAGATAGTTGCAGCGGCTATG GTTGCCGCTCATGTTTCTGAGTTATTTCGCCGGTCGAGGCCATGCCTAAATGCACTATCT TCACTGAAGCGATGTAAGTGGGATGCTGAGATTTCTACCAGGGCATCATCCCTTTACCAT TTGATCGATTTGCATGGTAAAACTGTGTCCTCCATCGTGAACAAAGCTGAGCCTCTAGAA GCTCACCTGACTTTTACATCAGTAAAGAGAGATGGTCAACAACACATTGAGGAAAACAGC ACCAGCTCATCGGGTAATGGCAACTTGGAAAAGAAGAATGCTTCAGCCTCACACATGAAA AATGGTTTTTCAAGACCACTCTTGAAATGCTCAGAAGAGGCTAGGCGAAATGGTAATGTT GCAAGTACATCCGGGAAAGTTCCTGCAACTTTACAGGCTGAAGCATCTGATTTGGCTAAC TTCCTTACCATGGATAGAAATGGGGGTTATCGAGGCTCTCAGACTCTCCTAAGTTCTGTT ATCTCAGAAAAACAGGAATTATGCTTCTCTGTTGTCTCATTGCTCTGGCATAAGCTTGCA T
Protein Sequence (669 aa)
>BART1_0-u18690.011 669 150831_barley_pseudomolecules MPSTPRWAVANGAGVILSVCDEEVARYETANLTAAAVPALLLPPPTTPLDEHLVAGLPPL EPYARLFHRYYAIATPSATQRLLFGLLEAPPSWAPDALDAAVQLVELLRAAEDYATGMRL PKNWLHLHFLRAIGTAMSMRAGIAADTAAALLFRILSQPTLLFPPLRHAEGVEVQHEPLG GYVSSYKRQLEVPASETTIDATAQGIASLLCAHGPDVEWRICTIWEAAYGLLPLNSSAVD LPEIVVAAPLQPPTLSWSLYLPLLKVFEYLPRGSPSEACLMRIFVATVEAILRRTFPSET SESSKRPRSQSKNLAVAELRTMIHSLFVESCASMNLASRLLFVVLTVCVSHQALPGGSKR PTGSENHSSEEATEDPRLTNGRNKVKKKQGPVGTFDSYVLAAVCALSCELQLFPILCKSA TNSKVKDSIKILKPGKNNGISNELQNSISSAILHTRRILGILEALFSLKPSSVGTSWNYS SNEIVAAAMVAAHVSELFRRSRPCLNALSSLKRCKWDAEISTRASSLYHLIDLHGKTVSS IVNKAEPLEAHLTFTSVKRDGQQHIEENSTSSSGNGNLEKKNASASHMKNGFSRPLLKCS EEARRNGNVASTSGKVPATLQAEASDLANFLTMDRNGGYRGSQTLLSSVISEKQELCFSV VSLLWHKLA