Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G021140	99.5	-	-	8399	246	Partial-Overlap

Transcripts from Gene BART1_0-u18690

Transcript	Length(bp)	Description
BART1_0-u18690.001	3159	3159 bp MSTRG.18690.1 MSTRG.18690
BART1_0-u18690.002	4499	4499 bp MSTRG.18690.2 MSTRG.18690
BART1_0-u18690.003	3287	3287 bp MSTRG.18690.3 MSTRG.18690
BART1_0-u18690.004	3267	3267 bp MSTRG.18690.4 MSTRG.18690
BART1_0-u18690.005	3255	3255 bp MSTRG.18690.5 MSTRG.18690
BART1_0-u18690.006	4923	4923 bp MSTRG.18690.6 MSTRG.18690
BART1_0-u18690.007	3009	3009 bp MSTRG.18690.7 MSTRG.18690
BART1_0-u18690.008	4346	4346 bp MSTRG.18690.8 MSTRG.18690
BART1_0-u18690.009	3039	3039 bp MSTRG.18690.9 MSTRG.18690
BART1_0-u18690.010	3344	3344 bp MSTRG.18690.10 MSTRG.18690
BART1_0-u18690.011	3361	3361 bp MSTRG.18690.11 MSTRG.18690
BART1_0-u18690.012	3299	3299 bp MSTRG.18690.12 MSTRG.18690
BART1_0-u18690.013	3726	3726 bp MSTRG.18690.13 MSTRG.18690
BART1_0-u18690.014	2837	2837 bp MSTRG.18690.14 MSTRG.18690
BART1_0-u18690.015	1932	1932 bp MSTRG.18690.15 MSTRG.18690
BART1_0-u18690.016	766	766 bp MSTRG.18690.16 MSTRG.18690

Exon Structure of BART1_0-u18690

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g08700.6	+2	0.0	1140	606/677 (90%)	protein|GIGANTEA, putative, expressed
TAIR PP10	AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR	+2	0.0	833	470/693 (68%)	Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173
BRACH PP3	Bradi2g05226.1.p	+2	0.0	1187	632/677 (93%)	pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0009585	red, far-red light phototransduction
GO:0080167	response to karrikin
GO:0006355	regulation of transcription, DNA-templated
GO:0042542	response to hydrogen peroxide
GO:0042752	regulation of circadian rhythm
GO:0009637	response to blue light
GO:0044446	intracellular organelle part
GO:0048584	positive regulation of response to stimulus
GO:0005634	nucleus
GO:0009409	response to cold
GO:0048582	positive regulation of post-embryonic development
GO:0005515	protein binding
GO:0048511	rhythmic process
GO:0070013	intracellular organelle lumen
GO:0010218	response to far red light
GO:0009908	flower development
GO:0005737	cytoplasm
GO:0030154	cell differentiation
GO:0016021	integral component of membrane
GO:2000243	positive regulation of reproductive process
GO:2000028	regulation of photoperiodism, flowering

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons