- Transcript BART1_0-u18690.006
- Transcript IDBART1_0-u18690.006
- Gene IDBART1_0-u18690
Barley RTD
Exon Structure of BART1_0-u18690.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 67423171 | 67421727 | - |
| chr3H | 2 | 67425398 | 67425189 | - |
| chr3H | 3 | 67425680 | 67425530 | - |
| chr3H | 4 | 67425984 | 67425751 | - |
| chr3H | 5 | 67426259 | 67426201 | - |
| chr3H | 6 | 67426950 | 67426694 | - |
| chr3H | 7 | 67427189 | 67427047 | - |
| chr3H | 8 | 67427332 | 67427278 | - |
| chr3H | 9 | 67427705 | 67427429 | - |
| chr3H | 10 | 67429946 | 67427855 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.420594 | 1.70312 | 1.00289 |
| morex | ETI | 0.448562 | 0.810669 | 1.09566 |
| morex | LEA | 1.24869 | 1.65573 | 0.947278 |
| morex | EPI | 2.52308 | 1.83221 | 1.9717 |
| morex | ROO | 0.216615 | 1.2825 | 0.394988 |
| morex | ROO2 | 0.866939 | 0.645456 | 0.967517 |
| morex | NOD | 0.475932 | 0.083258 | 0.181857 |
| morex | RAC | 1.4837 | 1.29284 | 1.43323 |
| morex | INF1 | 1.40926 | 1.56186 | 1.20031 |
| morex | INF2 | 3.80807 | 1.39332 | 2.17738 |
| morex | CAR5 | 1.63275 | 1.06231 | 1.76054 |
| morex | CAR15 | 1.0314 | 1.2117 | 1.00787 |
| morex | LEM | 1.21417 | 1.02319 | 1.37012 |
| morex | LOD | 1.69627 | 0.875564 | 0.683562 |
| morex | PAL | 1.58662 | 1.07381 | 1.05078 |
| morex | SEN | 0.879798 | 2.21816 | 0.780279 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g08700.6 | +2 | 0.0 | 1140 | 606/677 (90%) | protein|GIGANTEA, putative, expressed |
| TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+2 | 0.0 | 833 | 470/693 (68%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
| BRACH PP3 | Bradi2g05226.1.p | +2 | 0.0 | 1187 | 632/677 (93%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4923 bp)
>BART1_0-u18690.006 4923 150831_barley_pseudomolecules TACCCCTCCCATTACGGAAAAAATCTTTTTCTCGCCTCTCCTCGCCCCTCACATTTTTCT CTCTCCTCCTCCTCCTCCTCTCTGCCTTCGCCTCTGCCTCAGCCTCGCCCGCCGCGCAAT CCCGTCGCCGGCGCCGCCGATTCGCCGCCCGAGCTCCGTATTGGGGCGCTCCCGACCGAG GTACAGCTCCTGGCTCCTTCCCCCGCTACCCCGAACTCCCGCCCAGCGCTCCGTTTTGTT CATTTTGCGCCGTGTTTGCTGCTCTGCCGCCTTGATTTTCGCTCGCGGCCCGTGGAGCCG GTAGATTCGAGGGTAGTCTGTGTTTGAGTGTACCCGGGCGAGGCGTCGCCGATGGTTTTA GCTGATAAGTTTCGCGTTCTGGCGGCGAGGTTCAGCTGATTGTGATGCAGTTTCTCTTCG TAATCTCGAGTAGATCAACGGGAGGCGGACGCTTGTTCCTGCGAAATTCGGGGCGGTTCC GGATTTGGCGCTTGTAGCGCGGATTCGAGCTTGGTTTTGCTCCGTTTTAGGGTGTCATTT CGGCGCGTAGATTTCGCAGTTTCGGCTGCGGATGTAACTGGTGTAGCGGAGACAGTTATT GGAAAAATCGTTTGGGGGTGAAGATGGTTATATGTTAGCTTATGGTTTTCCATTTTAATT CACAGCTAAACTCAAGGCCACAAGCAGAAATCTCGAAAGAAGCGGGTGTTGTGTGTCTGA GAAATTTTACTTGCTTTTGAAATATATCTGATGTGCAGAATTAAACTCCTTTTGGTTCTG CTCCTGTTCAACTTCCGAGGGTTACGTGTTGGAATGGATCTATATTGCATTTGTCTACTT GCTATATTTAGCGCGTGGATGGATCTAATCGGATTTTCTAAATTAGAAACGTGCGATGTT CGATAATAGACAAAAACATGGTAAGGCAAGTGAACTACCAATATTGTTTTACCCAAATTT GGTTAGCAGTCATCTGACTTGCAGTTATTGCCCCTCTGAAATATGTGGATTGTGTATTAT TATGTTCAGATTTGTATGAACTTGTACAGTAGTTATAAGCTTACAACGTAGCTCTGCTAT TGTTTTTTCTTTCTCCTTTTTCTTCATTCTGGTTTCTGTTTCTGGGGTCCCAGTTCCGAG TTGTTTTCTTTGTTTCTGCGTTGTGCCATTTTGGTGTTACTCATCTAATACAAACGGCAC ATCTTTTGGTCTGATGTGTCATGTGTGTTCGAGAAAGACGGCATATATCTTTTATTTCTT TATTGAGAATGGTTGCTCCTTTTCTAGATGAGAATTTGATGCTTCTAGTTGTGTAAAAAT ACATCAATTTTACACACATAAGCTCTTTTTAAAGTCCAAAAGACAATCCTCAGCTCCGAA ACAAAACAGTTCAATTTGCAACCTAAAACGACCCCCCCCCGCCGCGCGCGCGCCAAAAGA AAGAACATCTTTTGGGAGACGTGCCATTTACGTCCAAGGCAGCCATCTCTCCAACTCGAG GAATCATGTTGAGCAGAATTGGGTCTGGGACCAATGATGAAGATGAGTAGATGACTGAGC CCTTGGATCCTGATCCAAGGGTCAGAGTTGGCGATTAGATGTGTTCCTATACTATCTTAT TTCCCCAAGCATCTGGAATCATTCCATTCCATCCCATTCTCAAATCTCAAAGTCCAGGAT GGTTCCATTCCAGTCTACTTCATTCCTCAAACCACTAACGGTTTTAGAGTTGAAATCCTT TTTCTGACTCTGTTAAGGGCTGGGAATGTAAACGAGACTTCTTTTTAGAAATATGTTGCC AAGGCTATGCAAAATTTGTTCCATTGGCTGGTTGACCTCCTCTCTTGTCAATTTATGGCA ATATTTCTTGTTTTAAAATTTATTAAAATGACATCTATAATAATGTCCCTTTCCTTCTTT CGACTTTCCTTTTGCTATATTTTGCAATGCAGAGACGTTAAGCGCCTATGGTTGGAACTG GTTGATATGATATCTGGTCACATTGTGGGATGCAATCCCCCCTTAGTGGGGGGTGATTGA AGAAGTCAACAATAGGAGAACTTGCATCTTGCTGAAGTTTTCTGGTACTGAGGCTCTTAA ACTACCAAGTATGTCAGCGTCAAATGGGAAGTGGATTGATGGACTCCAGTTCTCATCACT GTTCTGGCCCCCGCCACACGATGCGCAGCAGAAACAGGTACAATGCTCATAGTTTAGCTA TGTCATATACGCTATAACTTTGTAAACACCTGATGTTAATGCGACACTTATGTTTTCTTT TCTTTTTGAAGGCACAAATTTTAGCCTATGTTGAGTACTTTGGTCAGTTCACATCTGACA GCGAGCAATTCCCGGAGGATGTAGCTCAGCTAATTCAAACTTGCTATCCATCAAAAGAAA AGCGGTTGGTAGATGAAGTATTAGCAACTTTTGTTCTCCATCACCCCGAGCATGGTCATG CAGTTGTACATCCAATTCTTTCACGCATCATAGACGGGACACTGAGTTATGATAGTCATG GTTCCCCATTCAATTCCTTCATCTCCTTATTTACCCAAAGTTCTGAGAAAGAGTACTCAG AGCAGTGGGCCTTGGCCTGTGGAGAGATTCTTAGAGTTCTAACTCACTACAACAGGCCAA TCTTTAAAGTTGCAGACTGTAACAACACCTCTGACCAGGCTACAACAAGTTGTTCTGCAC AGGAGAAAGCTAATTACTCTCCAGGAAATGAACCTGAACGGAAGCCATTGAGGCCATTAT CTCCTTGGATCACAGATATTTTGCTAACTGCACCTTTAGGCATTAGAAGCGACTATTTTA GATGGTGTGGTGGAGTTATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACAA CTGCCGAGGAGCTGGTAAGCACCCACAACTCATGCCATCCACCCCAAGATGGGCTGTTGC CAATGGAGCTGGAGTTATTTTAAGTGTCTGTGATGAGGAAGTAGCTCGTTATGAGACAGC AAACTTAACCGCGGCAGCTGTTCCCGCCCTTCTGCTACCTCCACCGACAACACCCTTGGA TGAGCATTTGGTGGCAGGGCTACCCCCTCTTGAGCCATACGCTCGCTTGTTTCATAGATA CTATGCAATTGCCACACCAAGTGCTACACAAAGATTGCTTTTTGGTCTTCTTGAAGCACC ACCATCATGGGCTCCAGATGCACTTGATGCAGCAGTTCAGCTTGTTGAACTCCTTCGGGC AGCTGAAGATTATGCTACTGGCATGCGGCTTCCAAAAAATTGGTTGCATCTTCATTTCTT GCGTGCGATTGGAACTGCAATGTCTATGAGGGCTGGTATTGCTGCCGATACAGCTGCTGC GTTGCTTTTTCGCATACTATCCCAACCAACGTTGCTTTTTCCTCCACTAAGGCATGCTGA AGGAGTTGAAGTGCAACATGAACCACTGGGTGGCTATGTATCATCATACAAAAGACAGCT GGAAGTTCCTGCATCTGAAACCACAATTGATGCCACTGCACAAGGCATTGCTTCCTTGCT GTGTGCTCATGGTCCTGATGTTGAGTGGAGAATATGTACCATCTGGGAAGCTGCCTATGG TTTGTTACCTCTGAATTCATCAGCAGTTGATTTGCCCGAAATCGTTGTAGCTGCTCCGCT TCAGCCACCTACTTTGTCATGGAGCCTATACTTGCCACTGTTGAAAGTATTCGAGTATCT ACCTCGTGGAAGTCCATCTGAAGCATGCCTTATGAGAATATTTGTGGCAACAGTTGAAGC TATACTCAGAAGAACTTTCCCTTCGGAAACCTCTGAATCATCTAAAAGACCAAGAAGTCA ATCCAAGAACCTTGCTGTTGCTGAACTCCGTACAATGATACATTCACTCTTTGTTGAATC ATGTGCTTCAATGAACCTTGCTTCCCGGTTGTTGTTTGTTGTATTAACTGTTTGCGTCAG TCATCAAGCTTTGCCAGGGGGCAGCAAAAGACCAACGGGTAGTGAAAACCATTCTTCTGA GGAGGCCACTGAGGACCCAAGATTAACCAATGGAAGAAATAAGGTCAAGAAGAAACAAGG GCCTGTTGGTACATTTGACTCGTATGTGCTGGCTGCTGTTTGTGCCTTATCTTGTGAGCT TCAGCTGTTCCCTATCCTTTGCAAGAGTGCAACAAACTCAAAAGTAAAAGACTCTATAAA GATCCTGAAGCCTGGAAAAAACAATGGGATCAGTAATGAGCTACAGAATAGCATTAGCTC AGCAATTCTCCATACTCGTAGAATTCTTGGCATCCTGGAAGCTCTTTTCTCCTTGAAGCC ATCATCAGTTGGTACCTCCTGGAACTATAGTTCAAATGAGATAGTTGCAGCGGCTATGGT TGCCGCTCATGTTTCTGAGTTATTTCGCCGGTCGAGGCCATGCCTAAATGCACTATCTTC ACTGAAGCGATGTAAGTGGGATGCTGAGATTTCTACCAGGGCATCATCCCTTTACCATTT GATCGATTTGCATGGTAAAACTGTGTCCTCCATCGTGAACAAAGCTGAGCCTCTAGAAGC TCACCTGACTTTTACATCAGTAAAGAGAGATGGTCAACAACACATTGAGGAAAACAGCAC CAGCTCATCGGGTAATGGCAACTTGGAAAAGAAGAATGCTTCAGCCTCACACATGAAAAA TGGTTTTTCAAGACCACTCTTGAAATGCTCAGAAGAGGCTAGGCGAAATGGTAATGTTGC AAGTACATCCGGGAAAGTTCCTGCAACTTTACAGGCTGAAGCATCTGATTTGGCTAACTT CCTTACCATGGATAGAAATGGGGGTTATCGAGGCTCTCAGACTCTCCTAAGTTCTGTTAT CTCAGAAAAACAGGAATTATGCTTCTCTGTTGTCTCATTGCTCTGGCATAAGCTTGCATG CNN
Protein Sequence (700 aa)
>BART1_0-u18690.006 700 150831_barley_pseudomolecules MVWWSYGKIRSWWRIEASNNCRGAGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETA NLTAAAVPALLLPPPTTPLDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAP PSWAPDALDAAVQLVELLRAAEDYATGMRLPKNWLHLHFLRAIGTAMSMRAGIAADTAAA LLFRILSQPTLLFPPLRHAEGVEVQHEPLGGYVSSYKRQLEVPASETTIDATAQGIASLL CAHGPDVEWRICTIWEAAYGLLPLNSSAVDLPEIVVAAPLQPPTLSWSLYLPLLKVFEYL PRGSPSEACLMRIFVATVEAILRRTFPSETSESSKRPRSQSKNLAVAELRTMIHSLFVES CASMNLASRLLFVVLTVCVSHQALPGGSKRPTGSENHSSEEATEDPRLTNGRNKVKKKQG PVGTFDSYVLAAVCALSCELQLFPILCKSATNSKVKDSIKILKPGKNNGISNELQNSISS AILHTRRILGILEALFSLKPSSVGTSWNYSSNEIVAAAMVAAHVSELFRRSRPCLNALSS LKRCKWDAEISTRASSLYHLIDLHGKTVSSIVNKAEPLEAHLTFTSVKRDGQQHIEENST SSSGNGNLEKKNASASHMKNGFSRPLLKCSEEARRNGNVASTSGKVPATLQAEASDLANF LTMDRNGGYRGSQTLLSSVISEKQELCFSVVSLLWHKLAC